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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 3
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane
iPSORT:plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G07250.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G398500.1 Wheat plasma membrane 97.65 98.23
TraesCS2B01G419100.1 Wheat plasma membrane 96.77 97.63
TraesCS4A01G179600.1 Wheat plasma membrane 52.2 92.71
EES11282 Sorghum cytosol 79.47 79.71
Zm00001d002632_P001 Maize plasma membrane 78.59 78.82
Os04t0569300-01 Rice cytosol 75.37 75.15
HORVU2Hr1G095170.6 Barley mitochondrion 76.25 70.46
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 60.12 62.5
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 56.01 60.25
PGSC0003DMT400007890 Potato plasma membrane 58.06 60.0
TraesCS5A01G314000.1 Wheat plasma membrane 56.3 59.63
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 58.06 59.46
KRH09112 Soybean plasma membrane 57.18 59.27
Solyc03g026080.2.1 Tomato plasma membrane 55.13 59.12
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 55.13 59.12
TraesCS1A01G188900.1 Wheat plasma membrane 56.6 59.02
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 54.84 58.62
CDY45976 Canola plasma membrane 54.84 58.62
KRH38564 Soybean plasma membrane 56.6 58.48
VIT_16s0100g00640.t01 Wine grape plasma membrane 55.72 58.46
CDY47350 Canola plasma membrane 53.96 58.41
TraesCS7A01G269900.1 Wheat plasma membrane 55.13 58.2
KRG91456 Soybean cytosol, golgi, plasma membrane 56.01 58.05
CDY67235 Canola plasma membrane 54.25 57.99
Bra027622.1-P Field mustard plasma membrane 53.37 57.96
KRH35359 Soybean cytosol, golgi, plasma membrane 55.72 57.58
CDY49197 Canola plasma membrane 53.96 57.32
AT1G12750.4 Thale cress plasma membrane 51.32 57.0
CDY66606 Canola plasma membrane 50.15 56.25
Bra019783.1-P Field mustard plasma membrane 50.15 56.25
TraesCS5A01G526000.1 Wheat plasma membrane 53.96 55.42
AT5G07250.1 Thale cress plasma membrane 55.43 54.62
Bra005930.1-P Field mustard plasma membrane 51.03 53.54
CDX98992 Canola plasma membrane 53.08 53.24
CDX78286 Canola plasma membrane 50.73 53.23
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 53.96 53.03
CDX70021 Canola plasma membrane 53.67 52.74
AT4G23070.1 Thale cress plasma membrane 48.39 52.72
CDX81043 Canola plasma membrane 50.15 52.45
CDY53134 Canola plasma membrane 48.09 52.23
Bra013673.1-P Field mustard plasma membrane 43.11 52.13
CDY41251 Canola plasma membrane 47.51 51.76
CDX70020 Canola mitochondrion, plasma membrane 48.68 51.23
TraesCS4A01G176100.1 Wheat plasma membrane 46.33 49.84
CDY60266 Canola plasma membrane 52.2 49.72
CDX98993 Canola cytosol 44.57 47.8
Bra009280.1-P Field mustard cytosol 47.8 43.7
TraesCS3A01G071500.1 Wheat plasma membrane 47.21 43.05
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF31InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixEnsemblPlantsGene:TraesCS2A01G401000EnsemblPlants:TraesCS2A01G401000.1
SEG:seg:::::
Description
No Description!
Coordinates
chr2A:-:654874383..654875842
Molecular Weight (calculated)
36908.2 Da
IEP (calculated)
8.995
GRAVY (calculated)
0.352
Length
341 amino acids
Sequence
(BLAST)
001: MSNPDVEAAG PARAATTTGI KPPPGRYYAG GDGQQHAPPV APFYYGQEAE RERQHHTWLV PLVVLANVAM FVVVMYYNDC PRNGRGADCL GGGFLRRFSF
101: QPLKENPLFG PSSATLGKYG GLDRYKVVHG GQGWRLETST WLHAGLIHLG ANMISLIFVG VRLEQQFGFW KVGLVYLFSG LGGSVLSVLF IRNGVSVGAS
201: GALFGLLGAM LSELITNWTI YTNRLAAMAN LIIIAAINLA LGILPHVDNF AHIGGFLTGF LLGFVLLIQP RFGWLEQPFG GKTKSKYTAC QIVLLVVALL
301: LAIAGLAVGL LMVFRGVNGN DHCSWCHYLT CVPTSHWKCD N
Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.