Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- plasma membrane 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07250.1 | KRH09922 | AT3G16310.1 | 21798944 |
| AT5G07250.1 | KRH23409 | AT3G16310.1 | 21798944 |
| AT5G07250.1 | KRH22653 | AT5G22290.1 | 21798944 |
| AT5G07250.1 | KRH26664 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35359 | Soybean | cytosol, golgi, plasma membrane | 96.35 | 96.06 |
| KRH09112 | Soybean | plasma membrane | 79.03 | 79.03 |
| KRH38564 | Soybean | plasma membrane | 78.42 | 78.18 |
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 69.91 | 70.77 |
| Solyc03g026080.2.1 | Tomato | plasma membrane | 68.09 | 70.44 |
| PGSC0003DMT400037141 | Potato | cytosol, golgi, plasma membrane | 67.48 | 69.81 |
| GSMUA_Achr11P... | Banana | cytosol | 67.78 | 66.37 |
| Os09t0525900-01 | Rice | plasma membrane | 63.83 | 65.02 |
| Zm00001d021231_P002 | Maize | plasma membrane | 63.83 | 64.81 |
| TraesCS5D01G320400.1 | Wheat | plasma membrane | 62.01 | 63.75 |
| EER99221 | Sorghum | cytosol, peroxisome, plasma membrane | 62.92 | 63.69 |
| CDX98992 | Canola | plasma membrane | 65.65 | 63.53 |
| Os08t0546700-01 | Rice | plasma membrane | 62.31 | 63.47 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 62.61 | 63.38 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 62.01 | 63.35 |
| Zm00001d006179_P002 | Maize | plasma membrane | 62.92 | 63.3 |
| HORVU5Hr1G080690.2 | Barley | plasma membrane | 61.7 | 63.24 |
| TraesCS5B01G314900.1 | Wheat | plasma membrane | 62.01 | 63.16 |
| Zm00001d052734_P002 | Maize | plasma membrane | 61.7 | 63.04 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 61.7 | 62.85 |
| Bra009279.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 66.26 | 62.82 |
| Os10t0521900-01 | Rice | plasma membrane | 63.22 | 62.65 |
| CDX70021 | Canola | plasma membrane | 65.96 | 62.54 |
| AT5G07250.1 | Thale cress | plasma membrane | 65.65 | 62.43 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 61.09 | 62.04 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 36.17 | 61.98 |
| TraesCS7B01G168100.1 | Wheat | plasma membrane | 61.7 | 61.89 |
| TraesCS7D01G270400.1 | Wheat | plasma membrane | 61.7 | 61.89 |
| Zm00001d029667_P001 | Maize | plasma membrane | 62.61 | 61.68 |
| Zm00001d029668_P001 | Maize | plasma membrane | 62.61 | 61.68 |
| HORVU7Hr1G056630.1 | Barley | plasma membrane | 61.09 | 61.66 |
| CDX81043 | Canola | plasma membrane | 60.79 | 61.35 |
| EER94630 | Sorghum | cytosol, golgi, plasma membrane | 62.31 | 61.19 |
| Bra005930.1-P | Field mustard | plasma membrane | 60.18 | 60.92 |
| EER95642 | Sorghum | cytosol, golgi, plasma membrane | 59.88 | 60.43 |
| CDX78286 | Canola | plasma membrane | 59.57 | 60.31 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 60.79 | 60.24 |
| TraesCS1D01G187500.1 | Wheat | plasma membrane | 58.97 | 60.06 |
| TraesCS4B01G356600.1 | Wheat | plasma membrane | 60.49 | 59.58 |
| TraesCS1B01G196600.1 | Wheat | plasma membrane | 58.97 | 59.51 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 58.97 | 59.33 |
| HORVU1Hr1G048610.3 | Barley | plasma membrane | 58.36 | 59.08 |
| Zm00001d027355_P001 | Maize | plasma membrane | 57.75 | 59.01 |
| TraesCS4D01G350300.1 | Wheat | plasma membrane | 59.57 | 58.86 |
| EES11282 | Sorghum | cytosol | 60.18 | 58.24 |
| Zm00001d002632_P001 | Maize | plasma membrane | 58.66 | 56.76 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 58.05 | 56.01 |
| CDX98993 | Canola | cytosol | 54.1 | 55.97 |
| TraesCS2B01G419100.1 | Wheat | plasma membrane | 57.14 | 55.62 |
| TraesCS2D01G398500.1 | Wheat | plasma membrane | 57.14 | 55.46 |
| Os04t0569300-01 | Rice | cytosol | 56.84 | 54.68 |
| Bra009280.1-P | Field mustard | cytosol | 59.88 | 52.81 |
| KRH10251 | Soybean | plasma membrane | 62.01 | 52.44 |
| KRH23080 | Soybean | plasma membrane | 62.01 | 52.04 |
| KRH66050 | Soybean | plasma membrane | 60.18 | 51.43 |
| KRG99546 | Soybean | plasma membrane | 59.57 | 51.04 |
| HORVU4Hr1G086150.3 | Barley | plastid | 59.88 | 50.77 |
| KRH09741 | Soybean | plasma membrane | 47.42 | 49.37 |
| KRH49106 | Soybean | plasma membrane | 39.21 | 48.13 |
| KRG99955 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 54.1 | 44.95 |
| HORVU2Hr1G095170.6 | Barley | mitochondrion | 46.5 | 41.46 |
| HORVU3Hr1G029090.1 | Barley | plastid | 17.63 | 38.16 |
| HORVU0Hr1G006330.1 | Barley | plastid | 17.63 | 38.16 |
| KRH64762 | Soybean | plasma membrane | 41.95 | 37.5 |
| KRH53148 | Soybean | plasma membrane | 42.25 | 37.27 |
Protein Annotations
| Gene3D:1.20.1540.10 | EntrezGene:100784224 | MapMan:19.4.2.6 | EMBL:ACUP02012688 | EnsemblPlantsGene:GLYMA_20G156400 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | UniProt:I1NGR1 |
| InterPro:IPR035952 | EnsemblPlants:KRG91456 | ProteinID:KRG91456 | ProteinID:KRG91456.1 | PFAM:PF01694 | PANTHER:PTHR22936 |
| PANTHER:PTHR22936:SF65 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | MEROPS:S54.015 | SUPFAM:SSF144091 |
| TMHMM:TMhelix | UniParc:UPI000233DE65 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:39510455..39513702
Molecular Weight (calculated)
36768.3 Da
IEP (calculated)
9.207
GRAVY (calculated)
0.368
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MARDLESGGG GTKNNRTAEE NYSAPESSHV YDSETHWTSW LVPMFVVANI AVFVITMYIN NCPRNNLRFQ GRCVARFLGR FSFQPMQENP LLGPSSSTLT
101: KMGALRWDNV VNRHQGWRLF TCIWLHAGVI HLLANMLSLV FIGIRLEQQF GFIKIGIIYL VSGFGGSVLS SLFIRDHISV GASGALFGLL GAMLSELITN
201: WTIYSNKAMA LITLLVIIVI NLGIGILPHV DNFAHIGGFL VGFLLGFILL PRPQFSWLEQ RRLPAGVGMK SKYKAYQYVL WIVSLILLIA GLSTALVMLF
301: RGEKGYDHCH WCRYLTCVPT SKWECSNDG
101: KMGALRWDNV VNRHQGWRLF TCIWLHAGVI HLLANMLSLV FIGIRLEQQF GFIKIGIIYL VSGFGGSVLS SLFIRDHISV GASGALFGLL GAMLSELITN
201: WTIYSNKAMA LITLLVIIVI NLGIGILPHV DNFAHIGGFL VGFLLGFILL PRPQFSWLEQ RRLPAGVGMK SKYKAYQYVL WIVSLILLIA GLSTALVMLF
301: RGEKGYDHCH WCRYLTCVPT SKWECSNDG
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [cytosol,plasma membrane,golgi]
SUBAcon: [cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.