CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02290
EES05123
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	EES05123	AT1G27300.1	21798944
AT5G07250.1	EES02290	AT3G16310.1	21798944
AT5G07250.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021231_P002	Maize	plasma membrane	95.08	95.37
Os09t0525900-01	Rice	plasma membrane	91.38	91.95
HORVU5Hr1G080690.2	Barley	plasma membrane	86.46	87.54
TraesCS5D01G320400.1	Wheat	plasma membrane	85.54	86.88
TraesCS5B01G314900.1	Wheat	plasma membrane	85.85	86.38
TraesCS5A01G314000.1	Wheat	plasma membrane	85.54	86.34
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	68.62	69.47
GSMUA_Achr1P07920_001	Banana	plasma membrane	67.69	68.54
GSMUA_Achr9P20880_001	Banana	plasma membrane	65.85	66.46
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	65.54	64.94
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	63.38	64.78
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	63.08	64.67
Solyc03g026080.2.1	Tomato	plasma membrane	63.08	64.47
VIT_16s0100g00640.t01	Wine grape	plasma membrane	64.0	64.0
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	62.15	63.32
CDY67235	Canola	plasma membrane	62.15	63.32
KRH09112	Soybean	plasma membrane	64.0	63.22
CDY45976	Canola	plasma membrane	61.85	63.01
KRG91456	Soybean	cytosol, golgi, plasma membrane	63.69	62.92
CDY47350	Canola	plasma membrane	60.92	62.86
Bra027622.1-P	Field mustard	plasma membrane	60.31	62.42
KRH38564	Soybean	plasma membrane	63.08	62.12
KRH35359	Soybean	cytosol, golgi, plasma membrane	62.77	61.82
CDY49197	Canola	plasma membrane	60.62	61.37
EER95642	Sorghum	cytosol, golgi, plasma membrane	61.23	61.04
EER94630	Sorghum	cytosol, golgi, plasma membrane	62.77	60.9
CDX98992	Canola	plasma membrane	63.69	60.88
AT5G07250.1	Thale cress	plasma membrane	64.31	60.4
AT1G12750.4	Thale cress	plasma membrane	56.62	59.93
Bra019783.1-P	Field mustard	plasma membrane	56.0	59.87
CDY66606	Canola	plasma membrane	56.0	59.87
PGSC0003DMT400007890	Potato	plasma membrane	60.62	59.7
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	60.92	59.46
EES11282	Sorghum	cytosol	62.15	59.41
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.38	59.37
CDX70021	Canola	plasma membrane	63.38	59.37
Bra005930.1-P	Field mustard	plasma membrane	58.77	58.77
CDX70020	Canola	mitochondrion, plasma membrane	57.85	58.02
CDX78286	Canola	plasma membrane	57.85	57.85
CDX81043	Canola	plasma membrane	57.54	57.36
CDY53134	Canola	plasma membrane	53.23	55.1
Bra013673.1-P	Field mustard	plasma membrane	47.69	54.96
CDY41251	Canola	plasma membrane	52.92	54.95
AT4G23070.1	Thale cress	plasma membrane	51.69	53.67
CDX98993	Canola	cytosol	51.08	52.2
CDY60266	Canola	plasma membrane	57.23	51.96
Bra009280.1-P	Field mustard	cytosol	55.38	48.26
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	56.62	42.69
EES00318	Sorghum	golgi, peroxisome, plasma membrane	53.54	41.33

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EntrezGene:8054878	UniProt:C5X638	EnsemblPlants:EER99221	ProteinID:EER99221
ProteinID:EER99221.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF62	InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	EnsemblPlantsGene:SORBI_3002G270700	SUPFAM:SSF144091	unigene:Sbi.13119	TMHMM:TMhelix
UniParc:UPI0001A83CFE	RefSeq:XP_002462700.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:65426879..65429807

Molecular Weight (calculated)

35938.2 Da

IEP (calculated)

9.013

GRAVY (calculated)

0.377

Length

325 amino acids

Sequence
(BLAST)

001: MASDGDGKGR VATAPGGGYG YGYGYGGYEG FEDRKWWPWL VPTVIVACIA VFVVEMYENN CPKNRSQLGG CVAGFLRRFS FQPLRENPLL GPSSSTLEKM
101: GALDWNKIVH QNQGWRLISC IWLHAGLIHL VVNMLSLLFI GIRLEQQFGF VRIGAIYLLS GFGGSVLSAL FLRNNYISVG ASGALFGLLG SMLSELLMNW
201: TIYSNKAAAI ITLLFIVALN LAIGILPHAD NFAHIGGFAT GFLLGFVLLA RPQFSWMERH ELPQTNQPPK YKAYQYILWV VALVLLLVGF VVSLVMLFKG
301: KNGNDGCHWC HYLNCVPTSK WKCNT

Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)

001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV

Arabidopsis Description

RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.