Factsheet for VIT_16s0100g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07250.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT5G07250.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g026080.2.1	Tomato	plasma membrane	73.54	75.16
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	73.23	74.84
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	74.46	73.78
KRG91456	Soybean	cytosol, golgi, plasma membrane	70.77	69.91
KRH09112	Soybean	plasma membrane	70.46	69.6
KRH35359	Soybean	cytosol, golgi, plasma membrane	70.15	69.09
GSMUA_Achr11P...	Banana	cytosol	70.15	67.86
KRH38564	Soybean	plasma membrane	68.62	67.58
Os09t0525900-01	Rice	plasma membrane	64.62	65.02
Zm00001d021231_P002	Maize	plasma membrane	64.31	64.51
TraesCS5D01G320400.1	Wheat	plasma membrane	63.08	64.06
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	64.0	64.0
TraesCS5A01G314000.1	Wheat	plasma membrane	63.08	63.66
HORVU5Hr1G080690.2	Barley	plasma membrane	62.77	63.55
TraesCS5B01G314900.1	Wheat	plasma membrane	63.08	63.47
Zm00001d006179_P002	Maize	plasma membrane	63.69	63.3
AT5G07250.1	Thale cress	plasma membrane	67.38	63.29
CDX98992	Canola	plasma membrane	65.85	62.94
CDX70021	Canola	plasma membrane	66.46	62.25
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.46	62.25
Os10t0521900-01	Rice	plasma membrane	63.38	62.05
Os08t0546700-01	Rice	plasma membrane	61.54	61.92
CDX70020	Canola	mitochondrion, plasma membrane	61.54	61.73
Os03t0116400-01	Rice	cytosol, peroxisome, plasma membrane	61.54	61.54
TraesCS1D01G187500.1	Wheat	plasma membrane	60.92	61.3
TraesCS7A01G269900.1	Wheat	plasma membrane	60.92	61.3
Zm00001d052734_P002	Maize	plasma membrane	60.62	61.18
Zm00001d029668_P001	Maize	plasma membrane	62.46	60.78
Zm00001d029667_P001	Maize	plasma membrane	62.46	60.78
TraesCS1B01G196600.1	Wheat	plasma membrane	60.92	60.74
TraesCS7D01G270400.1	Wheat	plasma membrane	60.92	60.37
TraesCS7B01G168100.1	Wheat	plasma membrane	60.92	60.37
EER94630	Sorghum	cytosol, golgi, plasma membrane	62.15	60.3
HORVU7Hr1G056630.1	Barley	plasma membrane	60.31	60.12
TraesCS1A01G188900.1	Wheat	plasma membrane	60.31	59.94
HORVU1Hr1G048610.3	Barley	plasma membrane	59.69	59.69
TraesCS4A01G179600.1	Wheat	plasma membrane	35.08	59.38
EES11282	Sorghum	cytosol	61.54	58.82
Bra005930.1-P	Field mustard	plasma membrane	58.77	58.77
CDX78286	Canola	plasma membrane	58.46	58.46
EER95642	Sorghum	cytosol, golgi, plasma membrane	58.15	57.98
Zm00001d002632_P001	Maize	plasma membrane	60.31	57.65
TraesCS5A01G526000.1	Wheat	plasma membrane	58.77	57.53
VIT_09s0002g06570.t01	Wine grape	plasma membrane	50.77	57.09
TraesCS4D01G350300.1	Wheat	plasma membrane	58.46	57.06
CDX81043	Canola	plasma membrane	57.23	57.06
CDX98993	Canola	cytosol	55.69	56.92
TraesCS4B01G356600.1	Wheat	plasma membrane	58.46	56.89
Zm00001d027355_P001	Maize	plasma membrane	56.31	56.83
TraesCS2B01G419100.1	Wheat	plasma membrane	58.15	55.92
TraesCS2D01G398500.1	Wheat	plasma membrane	58.15	55.75
TraesCS2A01G401000.1	Wheat	plasma membrane	58.46	55.72
Os04t0569300-01	Rice	cytosol	57.54	54.68
VIT_06s0004g04890.t01	Wine grape	plasma membrane	63.38	52.69
Bra009280.1-P	Field mustard	cytosol	60.0	52.28
HORVU4Hr1G086150.3	Barley	plastid	58.77	49.23
VIT_08s0007g00470.t01	Wine grape	plasma membrane	57.23	47.94
HORVU2Hr1G095170.6	Barley	mitochondrion	47.38	41.73
VIT_18s0001g04400.t01	Wine grape	plasma membrane	40.31	38.3
HORVU3Hr1G029090.1	Barley	plastid	17.23	36.84
HORVU0Hr1G006330.1	Barley	plastid	17.23	36.84

Protein Annotations

Gene3D:1.20.1540.10	EntrezGene:100241825	wikigene:100241825	MapMan:19.4.2.6	ProteinID:CBI31822	ProteinID:CBI31822.3
UniProt:D7TMU9	EMBL:FN596000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	EntrezGene:LOC100241825	wikigene:LOC100241825	PFAM:PF01694
PANTHER:PTHR22936	PANTHER:PTHR22936:SF62	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	MEROPS:S54.015
MEROPS:S54.A02	SUPFAM:SSF144091	TIGR:TC68527	TMHMM:TMhelix	UniParc:UPI00015CCB57	ArrayExpress:VIT_16s0100g00640
EnsemblPlantsGene:VIT_16s0100g00640	EnsemblPlants:VIT_16s0100g00640.t01	unigene:Vvi.23647	unigene:Vvi.7894	RefSeq:XP_002279077	RefSeq:XP_002279077.1
RefSeq:XP_003634078	RefSeq:XP_003634078.1	SEG:seg	:	:	:

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:D7TMU9]

Coordinates

chr16:-:16123183..16126365

Molecular Weight (calculated)

35911.2 Da

IEP (calculated)

9.394

GRAVY (calculated)

0.399

Length

325 amino acids

Sequence
(BLAST)

001: MPPSEDLESR GAKNRGGSYT SSSVIEDSET QWTSWLVPMF VVANVAVFVV AMYINNCPKE NSRVQGKCVA GFLGRFSFQP LKENPLFGPS SKTLEKLGAL
101: EWKKVVSKHQ GWRLVTCIWL HAGIIHLLVN MLSLVLIGIR LEQQFGFVRI GVIYLLSGFG GSVLSSLFIQ NSISVGASGA LFGLLGAMLS ELITNWSMYT
201: NRAAALLTLL VIVAVNLTVG ILPRVNNFAH IGGFVTGFFL GFILMPRPQF GWIEGRNLPA DVRVKSKYKA YQYVCWLVSL VLLIAGFTVG LVMLYKGKNG
301: SEHCHWCHYL SCVPTSSWKC DETQF

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.