Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22653 | Soybean | nucleus | 51.55 | 53.91 |
| Solyc06g074170.2.1 | Tomato | nucleus | 50.77 | 48.17 |
| PGSC0003DMT400015077 | Potato | nucleus | 50.52 | 48.04 |
| PGSC0003DMT400050482 | Potato | nucleus | 48.97 | 44.19 |
| Bra021471.1-P | Field mustard | cytosol, golgi, nucleus | 37.37 | 42.9 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 37.11 | 42.6 |
| VIT_15s0048g02310.t01 | Wine grape | cytosol | 18.04 | 42.42 |
| Solyc11g068750.1.1 | Tomato | nucleus, plasma membrane | 49.23 | 42.26 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 36.6 | 41.89 |
| AT3G44290.1 | Thale cress | cytosol | 36.08 | 41.79 |
| AT5G22290.1 | Thale cress | cytosol | 36.34 | 41.47 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 36.34 | 41.11 |
| Bra020182.1-P | Field mustard | cytosol | 36.08 | 40.82 |
| CDY09128 | Canola | cytosol | 36.08 | 40.82 |
| CDX70995 | Canola | cytosol | 35.05 | 40.72 |
| Bra002403.1-P | Field mustard | cytosol | 33.76 | 40.43 |
| CDX88803 | Canola | cytosol | 34.54 | 39.76 |
| Bra006619.1-P | Field mustard | cytosol | 34.28 | 39.47 |
| CDX92368 | Canola | cytosol | 34.02 | 39.4 |
| KRH26664 | Soybean | nucleus | 48.97 | 38.54 |
| CDY34716 | Canola | nucleus | 28.87 | 38.1 |
| VIT_17s0053g00740.t01 | Wine grape | nucleus | 22.68 | 36.97 |
| VIT_19s0085g00950.t01 | Wine grape | nucleus | 24.48 | 33.81 |
| VIT_02s0012g01040.t01 | Wine grape | nucleus | 24.23 | 25.75 |
| VIT_15s0048g02290.t01 | Wine grape | nucleus | 20.36 | 24.61 |
| VIT_15s0048g02320.t01 | Wine grape | nucleus | 20.36 | 22.38 |
| VIT_02s0025g03020.t01 | Wine grape | nucleus | 33.51 | 20.57 |
| VIT_13s0019g05230.t01 | Wine grape | nucleus | 22.42 | 20.14 |
| VIT_15s0048g02300.t01 | Wine grape | nucleus | 22.16 | 19.59 |
| VIT_15s0048g02280.t01 | Wine grape | golgi, nucleus, plasma membrane | 25.0 | 18.98 |
| VIT_16s0098g00760.t01 | Wine grape | mitochondrion | 28.61 | 17.24 |
| VIT_13s0019g05240.t01 | Wine grape | cytosol, nucleus, plastid | 24.23 | 16.82 |
| VIT_04s0079g00280.t01 | Wine grape | cytosol, nucleus, plasma membrane | 28.87 | 16.77 |
| VIT_18s0001g01820.t01 | Wine grape | nucleus | 24.48 | 16.61 |
| VIT_15s0048g02270.t01 | Wine grape | nucleus | 26.29 | 16.24 |
| VIT_04s0044g01220.t01 | Wine grape | nucleus | 21.91 | 15.18 |
Protein Annotations
| EntrezGene:100265540 | wikigene:100265540 | MapMan:15.5.17 | Gene3D:3.30.310.150 | EMBL:AM474719 | ProteinID:CAN63961 |
| ProteinID:CAN63961.1 | ProteinID:CCB51627 | ProteinID:CCB51627.1 | UniProt:F6HHD1 | EMBL:FN595757 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003441 | InterPro:IPR036093 |
| EntrezGene:LOC100265540 | wikigene:LOC100265540 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF40 | SUPFAM:SSF101941 | TMHMM:TMhelix | UniParc:UPI0002107F76 | ArrayExpress:VIT_06s0080g00970 |
| EnsemblPlantsGene:VIT_06s0080g00970 | EnsemblPlants:VIT_06s0080g00970.t01 | RefSeq:XP_002272914 | RefSeq:XP_002272914.1 | RefSeq:XP_002272914.2 | SEG:seg |
Description
No Description!
Coordinates
chr6:+:21041156..21046146
Molecular Weight (calculated)
44567.7 Da
IEP (calculated)
6.138
GRAVY (calculated)
-0.656
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MERERNQRFL DEGMSEVPRE TQLSIAASSM FPGFRFSPTD EELISHYLKK KIQGSEKSVE VIAEVEICKY EPWDLPAKSI IESENEWFFF SPRGRKYPNG
101: SQSKRATEYG YWKATGKERI VKSGSTLIGS KRTLVFHIGR APKGERTEWI MHEYCMEGKS QDSLVVCRLR KNTEFRMNGS QRRLSTMTGH NHAISEVNID
201: QTNLSEREQG IESSSNKCSS SYDSYSIGQV DSTSESDQKP SNEFTQPESS HQQDCDRADD CFAEIMNDDI IKLDETFLAD NPQLLFMIAD KTELERESEP
301: PEPVDTTQVL PFQGTANRRI RLKKQGPRRI SYPAEYMSIE PPKYLMKTLV NRLIYLLVII LTLLVLFSSL GGSGWVKKVI HTTMYHDF
101: SQSKRATEYG YWKATGKERI VKSGSTLIGS KRTLVFHIGR APKGERTEWI MHEYCMEGKS QDSLVVCRLR KNTEFRMNGS QRRLSTMTGH NHAISEVNID
201: QTNLSEREQG IESSSNKCSS SYDSYSIGQV DSTSESDQKP SNEFTQPESS HQQDCDRADD CFAEIMNDDI IKLDETFLAD NPQLLFMIAD KTELERESEP
301: PEPVDTTQVL PFQGTANRRI RLKKQGPRRI SYPAEYMSIE PPKYLMKTLV NRLIYLLVII LTLLVLFSSL GGSGWVKKVI HTTMYHDF
001: MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE NSVAVIAEVE IYKFEPWDLP EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
Arabidopsis Description
NTL8NAC domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.