Factsheet for VIT_14s0066g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g02400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01660.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94361	Soybean	plastid	64.79	69.17
Solyc02g093550.2.1	Tomato	plastid	67.96	67.48
GSMUA_Achr9P17960_001	Banana	mitochondrion	61.97	67.43
PGSC0003DMT400032845	Potato	cytosol	68.31	66.9
KRH07097	Soybean	plastid	57.75	65.6
EES11004	Sorghum	plastid	62.68	65.2
Os04t0481300-01	Rice	mitochondrion	60.92	64.55
TraesCS2A01G324500.1	Wheat	plastid	59.86	63.91
TraesCS2D01G338500.1	Wheat	plastid	59.51	63.53
Bra040545.1-P	Field mustard	mitochondrion	57.39	63.42
CDY37508	Canola	mitochondrion	57.39	63.42
Zm00001d003276_P001	Maize	plastid	61.97	63.31
TraesCS2B01G357700.1	Wheat	plastid	59.15	63.16
CDX77077	Canola	cytosol	57.04	63.03
AT3G01660.1	Thale cress	cytosol, mitochondrion	59.51	61.9
VIT_11s0016g02350.t01	Wine grape	plastid	30.63	27.62

Protein Annotations

EntrezGene:100250829	wikigene:100250829	Gene3D:3.40.50.150	MapMan:35.2	EMBL:AM430189	ProteinID:CAN73551
ProteinID:CAN73551.1	ProteinID:CBI34830	ProteinID:CBI34830.3	UniProt:D7TWF5	EMBL:FN596252	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259
EntrezGene:LOC100250829	wikigene:LOC100250829	InterPro:Methyltransf_11	PFAM:PF08241	PANTHER:PTHR43036	PANTHER:PTHR43036:SF2
InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	TIGR:TC57246	UniParc:UPI00015C9BA3	ArrayExpress:VIT_14s0066g00160	EnsemblPlantsGene:VIT_14s0066g00160
EnsemblPlants:VIT_14s0066g00160.t01	unigene:Vvi.4688	RefSeq:XP_002272025	RefSeq:XP_002272025.1	RefSeq:XP_010660836.1	:

Description

No Description!

Coordinates

chr14:-:26738301..26739683

Molecular Weight (calculated)

32566.7 Da

IEP (calculated)

9.317

GRAVY (calculated)

-0.375

Length

284 amino acids

Sequence
(BLAST)

001: MLTFHPNPKP WHPSTPTNFS SIPFKARSFP SRIANSINEK NEPKQSSAGK IKRLVLTQEG RTKFNAYPDR EFYAYPRFVT HVDSGFISTL TDLYRERLSP
101: GSEILDLMSS WVSHLPKEIE YKRVVGHGLN AQELAKNPRL DYFFVKDLNQ DQKLESDSCN FDAVLCTVSV QYLQYPEKVF AEVFRVLRPG GVFIVSFSNR
201: LFYEKAISAW RDGTAYSRVQ LVVQYFQCVE GFTQPETIRK LPATNGAQED KGPLSWIARL LGFLSGSDPF YAVIAYKNFK PLYE

Best Arabidopsis Sequence Match ( AT3G01660.1 )
(BLAST)

001: MDSLRFNLQQ SPFQLKPRIL RPRITNISNR IDETDPRPSS SAGRIQRLVL NNEGRTKLNA DPDREFYSYP RFVNHVDDSF ISSLTELYRN RLRPGSTVLD
101: LMSSWVSHLP EEVKYEKVVG HGLNAQELAR NPRLDYFFVK DLNEDQKFEF EDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGVLIVS FSNRMFYEKA
201: IRVWRDGTEY SRIQLVVQYF QSIEGFTQPE IIRQQPGAQI SVLTRLMGFI GLASTPDPFN AVIAYKNFKP IYE

Arabidopsis Description

At3g01660 [Source:UniProtKB/TrEMBL;Acc:Q9SS89]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.