CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01660.1	KRH10001	AT3G13720.1	21798944
AT3G01660.1	KRH23330	AT3G13720.1	21798944
AT3G01660.1	KRH44167	AT3G13720.1	21798944
AT3G01660.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07097	Soybean	plastid	83.08	88.4
GSMUA_Achr9P17960_001	Banana	mitochondrion	63.91	65.13
VIT_14s0066g00160.t01	Wine grape	plastid	69.17	64.79
Os04t0481300-01	Rice	mitochondrion	64.29	63.81
Solyc02g093550.2.1	Tomato	plastid	68.05	63.29
PGSC0003DMT400032845	Potato	cytosol	68.8	63.1
TraesCS2D01G338500.1	Wheat	plastid	62.03	62.03
TraesCS2B01G357700.1	Wheat	plastid	61.65	61.65
TraesCS2A01G324500.1	Wheat	plastid	61.65	61.65
EES11004	Sorghum	plastid	62.78	61.17
AT3G01660.1	Thale cress	cytosol, mitochondrion	62.41	60.81
Zm00001d003276_P001	Maize	plastid	63.16	60.43
Bra040545.1-P	Field mustard	mitochondrion	57.89	59.92
CDY37508	Canola	mitochondrion	57.89	59.92
CDX77077	Canola	cytosol	57.89	59.92
KRH49054	Soybean	mitochondrion, plastid	33.08	29.24
KRH74154	Soybean	mitochondrion	27.82	28.68

Protein Annotations

EMBL:ACUP02011939	EnsemblPlants:KRG94361	EnsemblPlantsGene:GLYMA_19G079000	EntrezGene:100305678	Gene3D:3.40.50.150	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259
InterPro:Methyltransf_11	InterPro:SAM-dependent_MTases	PANTHER:PTHR43036	PANTHER:PTHR43036:SF2	PFAM:PF08241	ProteinID:KRG94361
ProteinID:KRG94361.1	SUPFAM:SSF53335	UniParc:UPI00023D98F7	UniProt:I1N7H2	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr19:+:28410272..28412346

Molecular Weight (calculated)

30678.8 Da

IEP (calculated)

8.904

GRAVY (calculated)

-0.285

Length

266 amino acids

Sequence
(BLAST)

001: MQPISAPHVR TSIKIVSTLN ESYHTNQPPL AGKIKRLVLT QEGRTKLNIY PDREFYAFPR FVKHVDDGFV STLTNLYRER LRSDMEILDL MSSWVSHLPS
101: DVKYKKVVGH GLNGQELSKN PRLDFFVVKD LNKDQQFEFE SCSFDAVLCT VSVQYLQQPE KVFEEVFRVL KPGGAFIVSF SNRMFYEKAI SAWREGTAYS
201: RVQLVVQYFQ SVEGFTEPEV VRKLPNAQEN NMSPIGWIMR LFGLLSGSDP FYAVIAYRNY KPIHDA

Best Arabidopsis Sequence Match ( AT3G01660.1 )
(BLAST)

001: MDSLRFNLQQ SPFQLKPRIL RPRITNISNR IDETDPRPSS SAGRIQRLVL NNEGRTKLNA DPDREFYSYP RFVNHVDDSF ISSLTELYRN RLRPGSTVLD
101: LMSSWVSHLP EEVKYEKVVG HGLNAQELAR NPRLDYFFVK DLNEDQKFEF EDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGVLIVS FSNRMFYEKA
201: IRVWRDGTEY SRIQLVVQYF QSIEGFTQPE IIRQQPGAQI SVLTRLMGFI GLASTPDPFN AVIAYKNFKP IYE

Arabidopsis Description

At3g01660 [Source:UniProtKB/TrEMBL;Acc:Q9SS89]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.