CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY37482
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01660.1	CDY37482	AT3G13720.1	21798944
AT3G01660.1	CDY51733	AT3G13720.1	21798944
AT3G01660.1	CDY51734	AT3G13720.1	21798944
AT3G01660.1	CDY55133	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040545.1-P	Field mustard	mitochondrion	98.44	98.44
CDY37508	Canola	mitochondrion	98.44	98.44
AT3G01660.1	Thale cress	cytosol, mitochondrion	74.71	70.33
GSMUA_Achr9P17960_001	Banana	mitochondrion	59.92	59.0
KRG94361	Soybean	plastid	59.92	57.89
VIT_14s0066g00160.t01	Wine grape	plastid	63.03	57.04
TraesCS2D01G338500.1	Wheat	plastid	58.37	56.39
TraesCS2A01G324500.1	Wheat	plastid	58.37	56.39
Os04t0481300-01	Rice	mitochondrion	58.37	55.97
TraesCS2B01G357700.1	Wheat	plastid	57.59	55.64
KRH07097	Soybean	plastid	54.09	55.6
EES11004	Sorghum	plastid	58.75	55.31
Zm00001d003276_P001	Maize	plastid	56.03	51.8
Solyc02g093550.2.1	Tomato	plastid	57.59	51.75
PGSC0003DMT400032845	Potato	cytosol	57.98	51.38
CDY47761	Canola	cytosol	16.34	34.15
CDY30212	Canola	plastid	28.02	23.38
CDY54271	Canola	plastid	27.63	23.05

Protein Annotations

EnsemblPlants:CDX77077	EnsemblPlantsGene:GSBRNA2T00127657001	Gene3D:3.40.50.150	GO:A0A078CK35	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	InterPro:Methyltransf_11	InterPro:SAM-dependent_MTases
PANTHER:PTHR43036	PANTHER:PTHR43036:SF2	PFAM:PF08241	ProteinID:CDX77077	ProteinID:CDX77077.1	SEG:seg
SUPFAM:SSF53335	UniParc:UPI0004EF4AF5	MapMan:35.2	:	:	:

Description

BnaC04g38720D

Coordinates

chrLK031809:+:993359..994272

Molecular Weight (calculated)

29778.5 Da

IEP (calculated)

9.683

GRAVY (calculated)

-0.513

Length

257 amino acids

Sequence
(BLAST)

001: MDSLRFNLQQ SPFQLRPRRT IRPRITNISN QTEETETRPP SSAGKIQRLV LNNEGRTKLN AGPDREFYSY PRFVNHVDDG FISSLTDLYR NRLRSGSIVL
101: DLMSSWELAR NPRVDYFFVK DLNEDQKLEF QDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGALIVS FSNRMFYEKA IRVWRDGTEY GRVQLVVQYF
201: QSVQGFTQPE TIRQQPPPGG GAEKPVLNWF MGLIGLASRP DPFNAVIAYK NFKPLYE

Best Arabidopsis Sequence Match ( AT3G01660.1 )
(BLAST)

001: MDSLRFNLQQ SPFQLKPRIL RPRITNISNR IDETDPRPSS SAGRIQRLVL NNEGRTKLNA DPDREFYSYP RFVNHVDDSF ISSLTELYRN RLRPGSTVLD
101: LMSSWVSHLP EEVKYEKVVG HGLNAQELAR NPRLDYFFVK DLNEDQKFEF EDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGVLIVS FSNRMFYEKA
201: IRVWRDGTEY SRIQLVVQYF QSIEGFTQPE IIRQQPGAQI SVLTRLMGFI GLASTPDPFN AVIAYKNFKP IYE

Arabidopsis Description

At3g01660 [Source:UniProtKB/TrEMBL;Acc:Q9SS89]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.