Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g121460.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G01660.1 | Solyc03g121460.1.1 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032845 | Potato | cytosol | 91.61 | 90.34 |
| KRG94361 | Soybean | plastid | 63.29 | 68.05 |
| VIT_14s0066g00160.t01 | Wine grape | plastid | 67.48 | 67.96 |
| KRH07097 | Soybean | plastid | 56.99 | 65.2 |
| GSMUA_Achr9P17960_001 | Banana | mitochondrion | 58.39 | 63.98 |
| AT3G01660.1 | Thale cress | cytosol, mitochondrion | 57.69 | 60.44 |
| Bra040545.1-P | Field mustard | mitochondrion | 52.1 | 57.98 |
| CDY37508 | Canola | mitochondrion | 52.1 | 57.98 |
| Os04t0481300-01 | Rice | mitochondrion | 54.2 | 57.84 |
| CDX77077 | Canola | cytosol | 51.75 | 57.59 |
| TraesCS2D01G338500.1 | Wheat | plastid | 53.5 | 57.52 |
| EES11004 | Sorghum | plastid | 54.55 | 57.14 |
| TraesCS2A01G324500.1 | Wheat | plastid | 53.15 | 57.14 |
| TraesCS2B01G357700.1 | Wheat | plastid | 53.15 | 57.14 |
| Zm00001d003276_P001 | Maize | plastid | 54.55 | 56.12 |
| Solyc07g025520.2.1 | Tomato | cytosol, plastid | 28.67 | 35.34 |
Protein Annotations
| EnsemblPlants:Solyc02g093550.2.1 | EnsemblPlantsGene:Solyc02g093550.2 | Gene3D:3.40.50.150 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008168 | GO:GO:0016740 | GO:GO:0032259 | InterPro:Methyltransf_11 | InterPro:SAM-dependent_MTases |
| PANTHER:PTHR43036 | PANTHER:PTHR43036:SF2 | PFAM:PF08241 | SUPFAM:SSF53335 | UniParc:UPI00027686E8 | UniProt:K4BDF1 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:54382660..54384006
Molecular Weight (calculated)
33127.9 Da
IEP (calculated)
9.489
GRAVY (calculated)
-0.337
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLTIVTHSH PKTWKSPNLH LFPLPSKTKT QPSIIITPKA YNNEDNNSTA GKIKRMVLTQ QGRTKLNILP DKEFYAYPRF VTHVDDRFIS NLTDLYRKCL
101: KPEFEILDLM SSWVSHLPQE VKYKKVVGHG LNAQELAKNP KLDYFFVRDL NEDEKFEFEN CSFDAVLCTV SVQYLQQPEK VFAEVFRILR PGGVFIVSFS
201: NRLFYDKAIS AWRDSTGYGR VQLVVQYFQC IKGFTEPQVI RKLPTNDDQQ NKSPLSKIMQ LIGLLSASSD PFYAVIAYRN FKPVHE
101: KPEFEILDLM SSWVSHLPQE VKYKKVVGHG LNAQELAKNP KLDYFFVRDL NEDEKFEFEN CSFDAVLCTV SVQYLQQPEK VFAEVFRILR PGGVFIVSFS
201: NRLFYDKAIS AWRDSTGYGR VQLVVQYFQC IKGFTEPQVI RKLPTNDDQQ NKSPLSKIMQ LIGLLSASSD PFYAVIAYRN FKPVHE
001: MDSLRFNLQQ SPFQLKPRIL RPRITNISNR IDETDPRPSS SAGRIQRLVL NNEGRTKLNA DPDREFYSYP RFVNHVDDSF ISSLTELYRN RLRPGSTVLD
101: LMSSWVSHLP EEVKYEKVVG HGLNAQELAR NPRLDYFFVK DLNEDQKFEF EDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGVLIVS FSNRMFYEKA
201: IRVWRDGTEY SRIQLVVQYF QSIEGFTQPE IIRQQPGAQI SVLTRLMGFI GLASTPDPFN AVIAYKNFKP IYE
101: LMSSWVSHLP EEVKYEKVVG HGLNAQELAR NPRLDYFFVK DLNEDQKFEF EDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGVLIVS FSNRMFYEKA
201: IRVWRDGTEY SRIQLVVQYF QSIEGFTQPE IIRQQPGAQI SVLTRLMGFI GLASTPDPFN AVIAYKNFKP IYE
Arabidopsis Description
At3g01660 [Source:UniProtKB/TrEMBL;Acc:Q9SS89]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.