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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
 plastid: 20363867
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g056390.1.1
Solyc01g056400.1.1
Solyc01g056430.1.1
Solyc01g056450.1.1
Solyc01g060130.2.1
Solyc01g100350.2.1
Solyc02g070250.2.1
Solyc02g082060.1.1
Solyc02g093000.2.1
Solyc03g093510.2.1
Solyc03g121460.1.1
Solyc05g021100.2.1
Solyc05g052020.2.1
Solyc06g011290.1.1
Solyc06g011330.1.1
Solyc06g074170.2.1
Solyc07g054290.1.1
Solyc07g064930.2.1
Solyc08g006510.2.1
Solyc08g078220.2.1
Solyc10g047370.1.1
Solyc10g083550.1.1
Solyc10g083830.1.1
Solyc10g083840.1.1
Solyc10g083850.1.1
Solyc11g011040.1.1
Solyc11g042620.1.1
Solyc11g068750.1.1
Solyc12g014470.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G55190.1 Solyc11g042620.1.1 AT1G71480.1 21798944
AT1G55190.1 Solyc02g070250.2.1 AT2G34690.1 18845362
AT1G55190.1 Solyc02g082060.1.1 AT4G25680.1 21798944
AT1G55190.1 Solyc08g006510.2.1 AT5G10730.1 21798944
AT1G55190.1 Solyc03g093510.2.1 AT5G51180.1 21798944
AT1G55190.1 Solyc05g052020.2.1 AT5G51180.1 21798944
AT3G13710.1 Solyc01g060130.2.1 AT1G09180.1 21798944
AT3G13710.1 Solyc01g100350.2.1 AT1G09180.1 21798944
AT3G13710.1 Solyc01g056390.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc01g056400.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc01g056430.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc01g056450.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc06g011290.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc06g011330.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc10g083550.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc10g083830.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc10g083840.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc10g083850.1.1 AT3G53180.1 21798944
AT3G13710.1 Solyc01g060130.2.1 AT4G02080.1 21798944
AT3G13710.1 Solyc01g100350.2.1 AT4G02080.1 21798944
AT3G13710.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT3G13710.1 Solyc11g068750.1.1 AT5G22290.1 21798944
AT3G13720.1 Solyc07g054290.1.1 AT1G03600.1 21798944
AT3G13720.1 Solyc03g121460.1.1 AT1G55190.1 21798944
AT3G13720.1 Solyc11g042620.1.1 AT1G71480.1 21798944
AT3G13720.1 Solyc05g021100.2.1 AT2G30880.1 21798944
AT3G13720.1 Solyc02g070250.2.1 AT2G34690.1 18845362
AT3G13720.1 Solyc03g121460.1.1 AT3G13720.1 21798944
AT3G13720.1 Solyc02g093000.2.1 AT3G50110.1 21798944
AT3G13720.1 Solyc08g078220.2.1 AT4G17486.1 21798944
AT3G13720.1 Solyc02g082060.1.1 AT4G25660.1 21798944
AT3G13720.1 Solyc02g082060.1.1 AT4G25680.1 21798944
AT3G13720.1 Solyc10g047370.1.1 AT5G09450.1 21798944
AT3G13720.1 Solyc11g011040.1.1 AT5G37680.1 21798944
AT3G13720.1 Solyc08g078220.2.1 AT5G47310.1 21798944
AT3G13720.1 Solyc07g064930.2.1 AT5G55200.1 21798944
AT3G13720.1 Solyc12g014470.1.1 AT5G55200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400006409 Potato plasma membrane 96.15 96.15
KRH10001 Soybean mitochondrion 68.68 67.93
KRH23330 Soybean plastid 68.13 67.39
VIT_09s0002g02400.t01 Wine grape plastid 67.58 63.73
KRH47141 Soybean plasma membrane 59.34 60.67
AT1G55190.1 Thale cress plasma membrane 62.64 60.32
KRH44167 Soybean plasma membrane 58.24 60.23
CDY23634 Canola plasma membrane 58.24 58.56
AT3G13720.1 Thale cress cytosol, plasma membrane, plastid 60.44 58.51
GSMUA_Achr7P09070_001 Banana plastid 59.89 57.98
CDX97509 Canola plasma membrane 56.59 56.91
CDY51735 Canola plasma membrane 56.59 56.59
CDY37483 Canola plasma membrane 56.59 56.59
CDY24050 Canola cytosol, plasma membrane, plastid 57.69 56.15
CDY33064 Canola cytosol, plasma membrane, plastid 57.69 56.15
CDY26125 Canola cytosol, plasma membrane, plastid 58.24 56.08
AT3G13710.1 Thale cress plasma membrane 57.69 55.85
Bra027406.1-P Field mustard plasma membrane 54.95 55.25
Bra037983.1-P Field mustard extracellular, plasma membrane 42.31 55.0
Bra021504.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 54.95 54.95
Bra014355.1-P Field mustard cytosol, plasma membrane, plastid 56.59 54.5
CDY08228 Canola plasma membrane 56.04 53.97
EES00126 Sorghum plastid 53.85 51.04
Zm00001d039455_P002 Maize extracellular, mitochondrion 53.85 50.78
TraesCS3B01G122600.1 Wheat plastid 52.2 50.0
TraesCS3D01G106500.1 Wheat plastid 52.2 50.0
Os05t0200280-01 Rice plasma membrane 52.75 49.74
TraesCS3A01G104300.1 Wheat plastid 51.65 49.21
TraesCS1D01G130300.1 Wheat plastid 50.55 48.17
Bra031001.1-P Field mustard plasma membrane 47.8 48.07
TraesCS1A01G124100.1 Wheat plastid 50.0 47.64
CDX81845 Canola plasma membrane 47.25 47.51
TraesCS1B01G143000.1 Wheat plastid 50.0 47.4
Bra025954.1-P Field mustard plasma membrane 47.8 47.28
CDY26225 Canola plasma membrane 47.25 46.74
AT1G17700.1 Thale cress plasma membrane 46.15 46.67
Solyc09g066000.1.1 Tomato mitochondrion, plastid 44.51 46.02
Os01t0196500-01 Rice plastid 50.55 45.77
CDY59501 Canola plasma membrane 46.15 45.65
Zm00001d037747_P001 Maize plastid 45.05 43.62
OQU77594 Sorghum plastid 46.15 42.86
HORVU1Hr1G028520.1 Barley plastid 50.55 42.59
CDY37482 Canola plastid 45.05 39.23
CDY55133 Canola plasma membrane 45.6 38.97
HORVU3Hr1G018940.2 Barley plastid 54.4 38.82
Bra021503.1-P Field mustard plastid 43.96 38.46
CDY51734 Canola plastid 43.41 37.8
Bra021502.1-P Field mustard plastid 42.86 36.45
CDY51733 Canola plastid 42.86 36.45
Solyc06g050570.1.1 Tomato plastid 41.21 34.4
Solyc09g083320.1.1 Tomato plasma membrane 31.32 33.93
Solyc10g076360.1.1 Tomato plastid 40.11 32.59
Solyc07g066190.1.1 Tomato plasma membrane, plastid 32.42 30.57
Solyc01g097230.2.1 Tomato plastid 24.73 27.95
Protein Annotations
EnsemblPlants:Solyc03g121460.1.1EnsemblPlantsGene:Solyc03g121460.1GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317PANTHER:PTHR19317:SF2PFAM:PF03208SEG:segTMHMM:TMhelixUniParc:UPI0002767306
UniProt:K4BMU5MapMan:22.8.4.3.2::::
Description
PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:K4BMU5]
Coordinates
chr3:-:69563689..69564237
Molecular Weight (calculated)
20201.0 Da
IEP (calculated)
7.782
GRAVY (calculated)
0.792
Length
182 amino acids
Sequence
(BLAST)
001: MTNYGTIPTS SSGPVNVEFI SRAKDVLKEG LAARRPWKEM FNFHSFNLPS GVSDAISRIK TNFSFFQTNY AIIVLVIVFL SLLWHPISLI VFIVLMAIWL
101: FLYFLRDEPL VIFGRLISDS TVLIVLSVLT LALLLFTGAT SNILISLAVG VFVVLIHASI RKTDDLFLDE EGAGFLRSAP SS
Best Arabidopsis Sequence Match ( AT1G55190.1 )
(BLAST)
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.