Factsheet for Bra027406.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000895.1-P
Bra002403.1-P
Bra006619.1-P
Bra006975.1-P
Bra018576.1-P
Bra020182.1-P
Bra028548.1-P
Bra036294.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13710.1	Bra018576.1-P	AT1G09180.1	21798944
AT3G13710.1	Bra006975.1-P	AT3G53180.1	21798944
AT3G13710.1	Bra028548.1-P	AT3G53180.1	21798944
AT3G13710.1	Bra000895.1-P	AT4G02080.1	21798944
AT3G13710.1	Bra036294.1-P	AT4G02080.1	21798944
AT3G13710.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G13710.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G13710.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97509	Canola	plasma membrane	98.34	98.34
Bra021504.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	75.69	75.27
AT3G13710.1	Thale cress	plasma membrane	68.51	65.96
Bra014355.1-P	Field mustard	cytosol, plasma membrane, plastid	58.56	56.08
PGSC0003DMT400006409	Potato	plasma membrane	56.35	56.04
Bra037983.1-P	Field mustard	extracellular, plasma membrane	42.54	55.0
Solyc03g121460.1.1	Tomato	plastid	55.25	54.95
KRH23330	Soybean	plastid	54.7	53.8
KRH10001	Soybean	mitochondrion	54.14	53.26
KRH44167	Soybean	plasma membrane	47.51	48.86
EES00126	Sorghum	plastid	51.38	48.44
KRH47141	Soybean	plasma membrane	47.51	48.31
Zm00001d039455_P002	Maize	extracellular, mitochondrion	51.38	48.19
VIT_09s0002g02400.t01	Wine grape	plastid	51.38	48.19
GSMUA_Achr7P09070_001	Banana	plastid	49.17	47.34
TraesCS3D01G106500.1	Wheat	plastid	48.62	46.32
TraesCS3B01G122600.1	Wheat	plastid	48.62	46.32
TraesCS3A01G104300.1	Wheat	plastid	47.51	45.03
Bra031001.1-P	Field mustard	plasma membrane	44.2	44.2
Bra025954.1-P	Field mustard	plasma membrane	44.75	44.02
Os01t0196500-01	Rice	plastid	48.07	43.28
Os05t0200280-01	Rice	plasma membrane	45.86	43.01
TraesCS1B01G143000.1	Wheat	plastid	44.75	42.19
TraesCS1D01G130300.1	Wheat	plastid	44.2	41.88
TraesCS1A01G124100.1	Wheat	plastid	44.2	41.88
Bra021502.1-P	Field mustard	plastid	47.51	40.19
Bra021503.1-P	Field mustard	plastid	45.86	39.9
HORVU1Hr1G028520.1	Barley	plastid	44.2	37.04
Zm00001d037747_P001	Maize	plastid	37.57	36.17
Bra017037.1-P	Field mustard	plastid	17.13	36.05
OQU77594	Sorghum	plastid	38.67	35.71
Bra007796.1-P	Field mustard	plastid	16.57	34.88
HORVU3Hr1G018940.2	Barley	plastid	48.62	34.51
Bra007216.1-P	Field mustard	plastid	38.12	33.99
Bra018602.1-P	Field mustard	plastid	38.67	33.65
Bra011125.1-P	Field mustard	mitochondrion	32.04	33.14
Bra003228.1-P	Field mustard	plastid	37.57	32.23
Bra004965.1-P	Field mustard	plastid	37.02	31.46
Bra009110.1-P	Field mustard	plastid	37.02	31.16
Bra038009.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	30.94	30.11
Bra030561.1-P	Field mustard	plasma membrane	28.73	29.21
Bra000056.1-P	Field mustard	plastid	33.7	27.48
Bra005112.1-P	Field mustard	plastid	25.41	27.38
Bra002833.1-P	Field mustard	plastid	27.07	26.49
Bra005924.1-P	Field mustard	plastid	29.83	24.77

Protein Annotations

EnsemblPlants:Bra027406.1	EnsemblPlants:Bra027406.1-P	EnsemblPlantsGene:Bra027406	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF2	PFAM:PF03208	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002547F92	UniProt:M4EF44	MapMan:22.8.4.3.2	:	:	:

Description

AT3G13720 (E=1e-062) PRA1.F3, PRA8 | PRA8

Coordinates

chrA05:+:20745232..20745777

Molecular Weight (calculated)

20246.1 Da

IEP (calculated)

9.424

GRAVY (calculated)

0.663

Length

181 amino acids

Sequence
(BLAST)

001: MTNYGAISTS SHGSPVVDLD SVSRVKQQIK DGLATRRPWR VMFDFHSVGI PRSLSDAFSR IKKNLVYFQT NYAIVFLVVI FLSLIKHPTS LIVLTVLVFV
101: WIFLYFPRDE PIKLFSYQVD DKTVLVCLSV ITIVLLFLTN ATLNIAGALL IGAVLVLIHA VVRKTDDLFL DEKAAMAETL A

Best Arabidopsis Sequence Match ( AT3G13720.1 )
(BLAST)

001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST

Arabidopsis Description

PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.