Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121460.1.1 | Tomato | plastid | 96.15 | 96.15 |
| KRH10001 | Soybean | mitochondrion | 70.88 | 70.11 |
| KRH23330 | Soybean | plastid | 70.33 | 69.57 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 68.13 | 64.25 |
| KRH47141 | Soybean | plasma membrane | 60.99 | 62.36 |
| KRH44167 | Soybean | plasma membrane | 59.89 | 61.93 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 62.09 | 60.11 |
| AT1G55190.1 | Thale cress | plasma membrane | 62.09 | 59.79 |
| CDY23634 | Canola | plasma membrane | 59.34 | 59.67 |
| CDX97509 | Canola | plasma membrane | 57.69 | 58.01 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 59.89 | 57.98 |
| CDY51735 | Canola | plasma membrane | 57.69 | 57.69 |
| CDY37483 | Canola | plasma membrane | 57.69 | 57.69 |
| AT3G13710.1 | Thale cress | plasma membrane | 59.34 | 57.45 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 58.79 | 57.22 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 58.79 | 57.22 |
| Bra037983.1-P | Field mustard | extracellular, plasma membrane | 43.41 | 56.43 |
| Bra027406.1-P | Field mustard | plasma membrane | 56.04 | 56.35 |
| Bra021504.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 56.04 | 56.04 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 57.69 | 55.56 |
| Bra014355.1-P | Field mustard | cytosol, plasma membrane, plastid | 56.04 | 53.97 |
| CDY08228 | Canola | plasma membrane | 55.49 | 53.44 |
| EES00126 | Sorghum | plastid | 53.85 | 51.04 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 53.85 | 50.78 |
| TraesCS3B01G122600.1 | Wheat | plastid | 52.75 | 50.53 |
| TraesCS3D01G106500.1 | Wheat | plastid | 52.75 | 50.53 |
| Bra031001.1-P | Field mustard | plasma membrane | 50.0 | 50.28 |
| Os05t0200280-01 | Rice | plasma membrane | 52.75 | 49.74 |
| TraesCS3A01G104300.1 | Wheat | plastid | 52.2 | 49.74 |
| CDX81845 | Canola | plasma membrane | 49.45 | 49.72 |
| Bra025954.1-P | Field mustard | plasma membrane | 50.0 | 49.46 |
| TraesCS1D01G130300.1 | Wheat | plastid | 51.65 | 49.21 |
| CDY26225 | Canola | plasma membrane | 49.45 | 48.91 |
| TraesCS1A01G124100.1 | Wheat | plastid | 51.1 | 48.69 |
| TraesCS1B01G143000.1 | Wheat | plastid | 51.1 | 48.44 |
| AT1G17700.1 | Thale cress | plasma membrane | 47.8 | 48.33 |
| CDY59501 | Canola | plasma membrane | 47.8 | 47.28 |
| PGSC0003DMT400038994 | Potato | mitochondrion, plastid | 45.05 | 46.59 |
| Os01t0196500-01 | Rice | plastid | 50.55 | 45.77 |
| Zm00001d037747_P001 | Maize | plastid | 46.15 | 44.68 |
| OQU77594 | Sorghum | plastid | 47.25 | 43.88 |
| HORVU1Hr1G028520.1 | Barley | plastid | 51.65 | 43.52 |
| HORVU3Hr1G018940.2 | Barley | plastid | 54.95 | 39.22 |
| CDY55133 | Canola | plasma membrane | 45.05 | 38.5 |
| CDY37482 | Canola | plastid | 43.96 | 38.28 |
| Bra021503.1-P | Field mustard | plastid | 42.86 | 37.5 |
| CDY51734 | Canola | plastid | 42.31 | 36.84 |
| CDY51733 | Canola | plastid | 42.31 | 35.98 |
| Bra021502.1-P | Field mustard | plastid | 42.31 | 35.98 |
| PGSC0003DMT400050026 | Potato | plastid | 41.76 | 35.35 |
| PGSC0003DMT400061546 | Potato | plastid | 42.31 | 35.32 |
| PGSC0003DMT400041063 | Potato | plastid | 41.21 | 32.89 |
| PGSC0003DMT400034320 | Potato | plastid | 37.91 | 32.55 |
| PGSC0003DMT400015659 | Potato | plasma membrane | 29.67 | 32.14 |
| PGSC0003DMT400056954 | Potato | plasma membrane | 31.87 | 31.02 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400006409 | EnsemblPlantsGene:PGSC0003DMG400002504 | EntrezGene:102592193 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 | PFAM:PF03208 | PGSC:PGSC0003DMG400002504 | RefSeq:XP_006342996.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002958B43 | UniProt:M0ZRA8 | MapMan:22.8.4.3.2 | : |
Description
PRA1 family protein F3 [Source:PGSC_GENE;Acc:PGSC0003DMG400002504]
Coordinates
chr3:-:60747610..60748550
Molecular Weight (calculated)
20280.2 Da
IEP (calculated)
8.994
GRAVY (calculated)
0.832
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNYGTIPTS SSGPVNVEFI SRAKDVLKEG LAARRPWKEM FNFHSFNLPS GVSDAISRIK TNFSFFQTNY AIVVLVIVFL SLLWHPISLI VFIVLMAVWL
101: FLYFLRDEPL VIFGRLISDR VVLIVLSVLT LALLLFTGAT SNILIALAVG VFVVLIHALI RKTDDLFLDE ESAGFLRSAP SS
101: FLYFLRDEPL VIFGRLISDR VVLIVLSVLT LALLLFTGAT SNILIALAVG VFVVLIHALI RKTDDLFLDE ESAGFLRSAP SS
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.