Factsheet for PGSC0003DMT400061546

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400024814
PGSC0003DMT400024816
PGSC0003DMT400032086
PGSC0003DMT400034320
PGSC0003DMT400041063
PGSC0003DMT400048927
PGSC0003DMT400048929
PGSC0003DMT400048935
PGSC0003DMT400061546
PGSC0003DMT400072398
PGSC0003DMT400072665
PGSC0003DMT400072666

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40380.1	PGSC0003DMT400034320	AT2G38360.1	21798944
AT2G40380.1	PGSC0003DMT400041063	AT2G38360.1	21798944
AT2G40380.1	PGSC0003DMT400061546	AT2G40380.1	21798944
AT2G40380.1	PGSC0003DMT400024814	AT3G53180.1	21798944
AT2G40380.1	PGSC0003DMT400024816	AT3G53180.1	21798944
AT2G40380.1	PGSC0003DMT400048927	AT3G53180.1	21798944
AT2G40380.1	PGSC0003DMT400048929	AT3G53180.1	21798944
AT2G40380.1	PGSC0003DMT400048935	AT3G53180.1	21798944
AT2G40380.1	PGSC0003DMT400072398	AT3G53180.1	21798944
AT2G40380.1	PGSC0003DMT400072665	AT3G53180.1	21798944
AT2G40380.1	PGSC0003DMT400072666	AT3G53180.1	21798944
AT2G40380.1	PGSC0003DMT400018924	AT4G25660.1	21798944
AT2G40380.1	PGSC0003DMT400032086	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g050570.1.1	Tomato	plastid	98.17	98.17
KRH54835	Soybean	endoplasmic reticulum, extracellular, vacuole	38.07	76.85
KRH14895	Soybean	plastid	75.23	76.28
KRH73238	Soybean	plastid	74.77	75.81
AT3G56110.1	Thale cress	plastid	67.89	70.81
Bra003228.1-P	Field mustard	plastid	68.35	70.62
CDX74794	Canola	plastid	68.81	70.42
Bra009110.1-P	Field mustard	plastid	69.27	70.23
CDX70153	Canola	plastid	69.27	70.23
CDX67633	Canola	plastid	67.89	70.14
CDY31997	Canola	plastid	67.43	70.0
Bra004965.1-P	Field mustard	plastid	68.35	69.95
CDY18870	Canola	plastid	66.51	69.38
CDX72173	Canola	plastid	63.76	68.47
Bra007216.1-P	Field mustard	plastid	63.3	67.98
CDY27245	Canola	plastid	63.3	67.98
AT2G40380.1	Thale cress	plastid	65.14	66.67
PGSC0003DMT400034320	Potato	plastid	59.63	61.32
CDY05662	Canola	plastid	20.18	60.27
PGSC0003DMT400041063	Potato	plastid	62.84	60.09
Bra017037.1-P	Field mustard	plastid	22.94	58.14
CDY25186	Canola	plastid	22.48	56.98
CDY41253	Canola	plastid	22.48	56.98
Bra007796.1-P	Field mustard	plastid	22.48	56.98
AT5G05380.2	Thale cress	plasma membrane	71.56	54.93
PGSC0003DMT400006409	Potato	plasma membrane	35.32	42.31
PGSC0003DMT400038994	Potato	mitochondrion, plastid	33.03	40.91
PGSC0003DMT400050026	Potato	plastid	34.86	35.35
PGSC0003DMT400015659	Potato	plasma membrane	23.85	30.95
PGSC0003DMT400056954	Potato	plasma membrane	25.23	29.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400061546	EnsemblPlantsGene:PGSC0003DMG400023954	EntrezGene:102578666	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	PGSC:PGSC0003DMG400023954	RefSeq:XP_006353416.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00029540B8	UniProt:M1C7N9	MapMan:22.8.4.3.2	:

Description

Prenylated Rab acceptor protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023954]

Coordinates

chr6:-:30454960..30456581

Molecular Weight (calculated)

23250.2 Da

IEP (calculated)

10.670

GRAVY (calculated)

0.600

Length

218 amino acids

Sequence
(BLAST)

001: MASPVTLPIS SPQSTGTTGS QSQAPISTPA FRSFISRLSS SIRQGFAQRR PWLELLDRTS FARPDSVAEA ASRIRKNFSY FRVNYVTLLA GVLALSLLSH
101: PFSLLVLLAL LGGWFFLYLF RPSDQPVVIF GRTFSDRETL GILVVFTIVV VFLTSVGSLL ISALLVGLAI VSAHGAFRVP EDLFLDDQEP ANVGFLSFLG
201: GAASSAAAAA APAVAARV

Best Arabidopsis Sequence Match ( AT5G05380.3 )
(BLAST)

001: MLRCRERSMV RVITRDHDVN TGNRLLQKKS IHSYGPLIHA PSSHPHAQSC VMMANPPTLP ISDHSGGGSQ SQQPVSTPAF RTFLSRLSSS IRQSLSQRRP
101: WLELVDRSAI SRPESLTDAY SRIRRNLPYF KVNYVTIVSL VLALSLLSHP FSLLVLLCLF CAWIFLYLFR PSDQPLVVLG RTFSDRETLG VLVILTIVVV
201: FLTSVGSLLT SALMIGFGIV CLHGAFRVPE DLFLDDQEPA NTGLLSFLSG AATSAAVAAA STPASGRV

Arabidopsis Description

PRA1.B3prenylated RAB acceptor 1.B3 [Source:TAIR;Acc:AT5G05380]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.