Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- peroxisome 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003228.1-P | Field mustard | plastid | 94.74 | 93.84 |
| CDY31997 | Canola | plastid | 94.26 | 93.81 |
| CDX67633 | Canola | plastid | 94.26 | 93.36 |
| CDY27245 | Canola | plastid | 89.47 | 92.12 |
| CDX72173 | Canola | plastid | 89.47 | 92.12 |
| Bra007216.1-P | Field mustard | plastid | 89.47 | 92.12 |
| CDY05662 | Canola | plastid | 32.06 | 91.78 |
| Bra017037.1-P | Field mustard | plastid | 37.32 | 90.7 |
| Bra007796.1-P | Field mustard | plastid | 36.84 | 89.53 |
| CDY25186 | Canola | plastid | 36.36 | 88.37 |
| CDY41253 | Canola | plastid | 35.41 | 86.05 |
| AT2G40380.1 | Thale cress | plastid | 79.43 | 77.93 |
| Solyc06g050570.1.1 | Tomato | plastid | 71.29 | 68.35 |
| PGSC0003DMT400061546 | Potato | plastid | 70.81 | 67.89 |
| KRH54835 | Soybean | endoplasmic reticulum, extracellular, vacuole | 34.93 | 67.59 |
| KRH73238 | Soybean | plastid | 68.42 | 66.51 |
| KRH14895 | Soybean | plastid | 68.42 | 66.51 |
| AT2G38360.1 | Thale cress | plastid | 61.72 | 58.64 |
| AT5G05380.2 | Thale cress | plasma membrane | 75.12 | 55.28 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 29.19 | 51.69 |
| AT5G01640.1 | Thale cress | plastid | 54.55 | 51.12 |
| AT5G07110.1 | Thale cress | plastid | 50.24 | 48.61 |
| AT1G55190.1 | Thale cress | plasma membrane | 34.45 | 38.1 |
| AT3G13710.1 | Thale cress | plasma membrane | 33.97 | 37.77 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 31.58 | 35.11 |
| AT1G17700.1 | Thale cress | plasma membrane | 29.67 | 34.44 |
| AT5G56230.1 | Thale cress | plasma membrane, plastid | 28.71 | 32.26 |
| AT4G29658.2 | Thale cress | plastid | 26.32 | 28.95 |
| AT1G08770.1 | Thale cress | plastid | 28.23 | 28.23 |
| AT1G55640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 23.92 | 26.74 |
| AT1G04260.1 | Thale cress | plasma membrane | 22.97 | 26.37 |
Protein Annotations
| MapMan:22.8.4.3.2 | EntrezGene:824777 | UniProt:A0A178VNJ7 | ProteinID:AEE79478.1 | ProteinID:AEE79479.1 | EMBL:AJ249560 |
| ProteinID:ANM65409.1 | ProteinID:ANM65410.1 | ArrayExpress:AT3G56110 | EnsemblPlantsGene:AT3G56110 | RefSeq:AT3G56110 | TAIR:AT3G56110 |
| RefSeq:AT3G56110-TAIR-G | EnsemblPlants:AT3G56110.1 | TAIR:AT3G56110.1 | EMBL:AY054569 | EMBL:AY064659 | EMBL:AY084557 |
| Unigene:At.5058 | ProteinID:CAB87410.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010008 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_001190100.1 | RefSeq:NP_001319766.1 | RefSeq:NP_001327380.1 |
| RefSeq:NP_191170.1 | ProteinID:OAP07071.1 | PFAM:PF03208 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | Symbol:PRA1.B1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF34 |
| InterPro:Prenylated_rab_accept_PRA1 | UniProt:Q9LYN0 | TMHMM:TMhelix | UniParc:UPI000005EB81 | SEG:seg | : |
Description
PRA1B1PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNJ7]
Coordinates
chr3:-:20820214..20823106
Molecular Weight (calculated)
22619.7 Da
IEP (calculated)
9.187
GRAVY (calculated)
0.537
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.