Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 43.5 | 82.2 |
| CDX80758 | Canola | plastid | 78.03 | 81.31 |
| AT2G38360.1 | Thale cress | plastid | 60.09 | 60.91 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 22.42 | 59.52 |
| Solyc10g076360.1.1 | Tomato | plastid | 57.85 | 57.59 |
| PGSC0003DMT400041063 | Potato | plastid | 58.74 | 57.46 |
| KRH76033 | Soybean | endoplasmic reticulum | 54.26 | 55.25 |
| AT2G40380.1 | Thale cress | plastid | 52.47 | 54.93 |
| PGSC0003DMT400034320 | Potato | plastid | 52.02 | 54.72 |
| AT3G56110.1 | Thale cress | plastid | 51.12 | 54.55 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 52.47 | 54.42 |
| KRH65569 | Soybean | plastid | 53.81 | 52.86 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 50.67 | 52.31 |
| GSMUA_Achr4P18690_001 | Banana | plastid | 50.67 | 51.13 |
| Zm00001d010603_P002 | Maize | mitochondrion | 49.33 | 50.69 |
| AT5G07110.1 | Thale cress | plastid | 48.88 | 50.46 |
| Os12t0107600-00 | Rice | plastid | 49.78 | 50.45 |
| Os11t0107600-01 | Rice | plastid | 49.78 | 50.45 |
| KXG22202 | Sorghum | plastid | 48.43 | 49.77 |
| GSMUA_Achr5P14320_001 | Banana | plastid | 41.7 | 49.73 |
| GSMUA_Achr7P22310_001 | Banana | plastid | 41.7 | 49.47 |
| GSMUA_Achr10P... | Banana | plastid | 40.36 | 49.45 |
| Os01t0827400-01 | Rice | extracellular, mitochondrion, plasma membrane | 31.84 | 48.97 |
| HORVU4Hr1G024530.1 | Barley | plastid | 49.33 | 48.67 |
| Os05t0474400-01 | Rice | plasma membrane, vacuole | 47.98 | 48.64 |
| TraesCS4D01G132000.1 | Wheat | plastid | 49.33 | 48.46 |
| TraesCS4A01G180500.1 | Wheat | plastid | 48.88 | 47.81 |
| TraesCS4B01G137300.1 | Wheat | plastid | 48.43 | 47.58 |
| HORVU1Hr1G070360.1 | Barley | plastid | 45.74 | 45.95 |
| TraesCS1B01G307400.1 | Wheat | golgi, unclear | 45.29 | 45.91 |
| KRH49465 | Soybean | plastid | 45.74 | 45.74 |
| TraesCS1D01G293300.1 | Wheat | plastid | 45.29 | 45.7 |
| KRH32827 | Soybean | plastid | 46.19 | 45.58 |
| OQU82692 | Sorghum | plastid | 45.74 | 45.54 |
| KRH00333 | Soybean | plastid | 46.19 | 45.37 |
| TraesCS1A01G297900.1 | Wheat | plastid | 44.84 | 45.25 |
| TraesCS3A01G348100.1 | Wheat | plastid | 42.15 | 44.34 |
| EES15518 | Sorghum | plastid | 46.19 | 44.21 |
| Zm00001d043018_P001 | Maize | mitochondrion | 43.5 | 44.09 |
| TraesCS5A01G151600.1 | Wheat | plastid | 44.39 | 43.81 |
| TraesCS5D01G156800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 44.39 | 43.81 |
| TraesCS3B01G380000.1 | Wheat | plastid | 41.7 | 43.66 |
| HORVU3Hr1G088130.1 | Barley | plastid | 43.05 | 43.64 |
| TraesCS5B01G150200.1 | Wheat | plastid | 43.95 | 43.36 |
| TraesCS3D01G341700.1 | Wheat | plastid | 42.6 | 42.99 |
| Zm00001d052322_P001 | Maize | plastid | 36.32 | 42.86 |
| EES03822 | Sorghum | plastid | 42.15 | 42.15 |
| HORVU5Hr1G047520.1 | Barley | endoplasmic reticulum, plastid | 44.84 | 41.32 |
| AT5G05380.2 | Thale cress | plasma membrane | 49.78 | 39.08 |
| HORVU2Hr1G086930.1 | Barley | cytosol, plastid | 19.28 | 38.39 |
| KXG38626 | Sorghum | golgi, plasma membrane, plastid | 31.39 | 37.84 |
| AT1G55190.1 | Thale cress | plasma membrane | 28.25 | 33.33 |
| AT5G56230.1 | Thale cress | plasma membrane, plastid | 26.46 | 31.72 |
| AT1G55640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 25.56 | 30.48 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 25.56 | 30.32 |
| AT3G13710.1 | Thale cress | plasma membrane | 25.56 | 30.32 |
| AT1G17700.1 | Thale cress | plasma membrane | 24.22 | 30.0 |
| AT1G08770.1 | Thale cress | plastid | 26.91 | 28.71 |
| OQU79263 | Sorghum | plastid | 21.08 | 28.48 |
| AT1G04260.1 | Thale cress | plasma membrane | 21.97 | 26.92 |
| AT4G29658.2 | Thale cress | plastid | 22.87 | 26.84 |
Protein Annotations
| MapMan:22.8.4.3.2 | EntrezGene:831708 | UniProt:A0A178UH31 | ProteinID:AED90370.1 | ArrayExpress:AT5G01640 | EnsemblPlantsGene:AT5G01640 |
| RefSeq:AT5G01640 | TAIR:AT5G01640 | RefSeq:AT5G01640-TAIR-G | EnsemblPlants:AT5G01640.1 | TAIR:AT5G01640.1 | EMBL:BT000918 |
| ProteinID:CAB82280.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0010008 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_195784.1 | ProteinID:OAO93246.1 |
| PFAM:PF03208 | PO:PO:0000293 | Symbol:PRA1.B5 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF34 | InterPro:Prenylated_rab_accept_PRA1 |
| UniProt:Q9M012 | TMHMM:TMhelix | UniParc:UPI00000AC557 | SEG:seg | : | : |
Description
PRA1B5PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178UH31]
Coordinates
chr5:-:241212..242322
Molecular Weight (calculated)
23814.9 Da
IEP (calculated)
6.239
GRAVY (calculated)
0.587
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSTNPPVLP ISTTATDTTN QPPIVTAVVE SQPPVVRAFV NGVTETVCGG LSRSRPWSEL LDRSAFTKPD SLSEAGTRFR KNSSYFRVNY VCIVALILGF
101: SLLAHPFSLI LLLCLAASWL FLYLFRPSDR PLILFGRSFS EYETLGGLIL STIAVIFFTS VGSVLISALM IGIATICVHG AFRAPDDLFL DEQDHAASGF
201: LSFIGVPAIP SVAPSASSAA SPV
101: SLLAHPFSLI LLLCLAASWL FLYLFRPSDR PLILFGRSFS EYETLGGLIL STIAVIFFTS VGSVLISALM IGIATICVHG AFRAPDDLFL DEQDHAASGF
201: LSFIGVPAIP SVAPSASSAA SPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.