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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:
  • plastid 2
  • extracellular 2
  • endoplasmic reticulum 3
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plastid
Any Predictor:plastid, secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:plastid
TargetP:secretory
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G070360.1
HORVU1Hr1G072070.1
HORVU1Hr1G082010.3
HORVU2Hr1G086930.1
HORVU3Hr1G030760.2
HORVU3Hr1G069970.2
HORVU3Hr1G086830.7
HORVU3Hr1G088130.1
HORVU4Hr1G024530.1
HORVU4Hr1G074140.2
HORVU5Hr1G047520.1
HORVU5Hr1G112790.2
HORVU7Hr1G002080.2
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 HORVU1Hr1G072070.1 AT3G46060.1 21798944
AT2G38360.1 HORVU3Hr1G086830.7 AT3G46060.1 21798944
AT2G38360.1 HORVU5Hr1G112790.2 AT3G46060.1 21798944
AT5G01640.1 HORVU7Hr1G002080.2 AT4G25660.1 21798944
AT5G01640.1 HORVU1Hr1G070360.1 AT5G01640.1 21798944
AT5G01640.1 HORVU2Hr1G086930.1 AT5G01640.1 21798944
AT5G01640.1 HORVU3Hr1G088130.1 AT5G01640.1 21798944
AT5G01640.1 HORVU4Hr1G024530.1 AT5G01640.1 21798944
AT5G01640.1 HORVU5Hr1G047520.1 AT5G01640.1 21798944
AT5G01640.1 HORVU4Hr1G074140.2 AT5G12390.1 21798944
AT5G01640.1 HORVU1Hr1G082010.3 AT5G41600.1 21798944
AT5G01640.1 HORVU3Hr1G030760.2 AT5G41600.1 21798944
AT5G01640.1 HORVU3Hr1G069970.2 AT5G41600.1 21798944
AT5G01640.1 HORVU7Hr1G075700.2 AT5G41600.1 21798944
AT5G01640.1 HORVU7Hr1G081290.4 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G156800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 82.64 88.5
TraesCS5A01G151600.1 Wheat plastid 82.23 88.05
TraesCS5B01G150200.1 Wheat plastid 80.17 85.84
Os11t0107600-01 Rice plastid 64.05 70.45
HORVU4Hr1G024530.1 Barley plastid 65.7 70.35
Os12t0107600-00 Rice plastid 63.22 69.55
OQU82692 Sorghum plastid 61.16 66.07
EES15518 Sorghum plastid 59.92 62.23
Zm00001d052322_P001 Maize plastid 47.93 61.38
KXG38626 Sorghum golgi, plasma membrane, plastid 42.98 56.22
GSMUA_Achr3P10010_001 Banana plastid 48.35 54.17
GSMUA_Achr5P07440_001 Banana plastid 46.28 52.09
HORVU1Hr1G070360.1 Barley plastid 44.63 48.65
HORVU3Hr1G088130.1 Barley plastid 44.21 48.64
KRH76033 Soybean endoplasmic reticulum 42.15 46.58
Solyc10g076360.1.1 Tomato plastid 42.98 46.43
CDY07736 Canola plastid 42.15 45.95
AT4G00005.1 Thale cress extracellular, plasma membrane 22.31 45.76
PGSC0003DMT400041063 Potato plastid 42.98 45.61
Bra000056.1-P Field mustard plastid 41.74 45.5
KRG93818 Soybean extracellular, plasma membrane, vacuole 15.7 45.24
CDY63156 Canola plastid 40.5 44.95
AT5G01640.1 Thale cress plastid 41.32 44.84
AT2G38360.1 Thale cress plastid 40.5 44.55
KRH65569 Soybean plastid 41.74 44.49
CDX80758 Canola plastid 38.43 43.46
PGSC0003DMT400034320 Potato plastid 37.6 42.92
Bra005112.1-P Field mustard plastid 28.93 41.67
KRH49465 Soybean plastid 38.02 41.26
KRH00333 Soybean plastid 38.43 40.97
CDY61529 Canola plastid 20.66 39.68
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 29.75 39.56
KRH32827 Soybean plastid 34.71 37.17
HORVU2Hr1G086930.1 Barley cytosol, plastid 16.94 36.61
HORVU5Hr1G106520.1 Barley cytosol 25.62 26.5
HORVU1Hr1G028520.1 Barley plastid 22.73 25.46
HORVU0Hr1G013770.1 Barley mitochondrion 29.75 22.43
HORVU3Hr1G018940.2 Barley plastid 22.31 21.18
Protein Annotations
EnsemblPlants:HORVU5Hr1G047520.1EnsemblPlantsGene:HORVU5Hr1G047520GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317PANTHER:PTHR19317:SF35PFAM:PF03208SEG:segTMHMM:TMhelixUniParc:UPI000B47DF75
UniProt:A0A287R329MapMan:22.8.4.3.2::::
Description
PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A287R329]
Coordinates
chrchr5H:-:369193215..369194317
Molecular Weight (calculated)
23564.2 Da
IEP (calculated)
5.198
GRAVY (calculated)
0.431
Length
242 amino acids
Sequence
(BLAST)
001: MAAASPPLLP VSVLPAATAT TATIALPAPD TSSVADQRAY LARLLDSAKR SLSGARPWAE LLDRAALSRP DSLADATARV RRNLAYFRVN YALLVALSLA
101: ASLLAHPFAL AALLALLAAW CALYLLRPAD AAPLAAFGKT FSERETLGGL VAASAFVVFV TSVGSIVFSA LAAGAALACA HGAFRVPEEQ LFLDDDVQPG
201: AGGXXXXXXX XXXPSTCSPS SPTPPEGEAG AAEAPPPPHA VD
Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.