Factsheet for Solyc10g076360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082060.1.1
Solyc06g005350.2.1
Solyc06g050570.1.1
Solyc08g081730.2.1
Solyc10g076360.1.1
Solyc11g065100.1.1
Solyc11g073050.1.1
Solyc12g099770.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	Solyc06g005350.2.1	AT3G46060.1	21798944
AT2G38360.1	Solyc11g073050.1.1	AT3G46060.1	21798944
AT5G01640.1	Solyc06g050570.1.1	AT2G40380.1	21798944
AT5G01640.1	Solyc02g082060.1.1	AT4G25660.1	21798944
AT5G01640.1	Solyc10g076360.1.1	AT5G01640.1	21798944
AT5G01640.1	Solyc11g065100.1.1	AT5G12390.1	21798944
AT5G01640.1	Solyc12g099770.1.1	AT5G12390.1	21798944
AT5G01640.1	Solyc08g081730.2.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041063	Potato	plastid	97.77	96.05
AT2G38360.1	Thale cress	plastid	63.84	65.0
Bra000056.1-P	Field mustard	plastid	64.29	64.86
CDY07736	Canola	plastid	63.84	64.41
KRH76033	Soybean	endoplasmic reticulum	62.5	63.93
CDY63156	Canola	plastid	61.16	62.84
KRH65569	Soybean	plastid	62.5	61.67
KRG93818	Soybean	extracellular, plasma membrane, vacuole	22.77	60.71
Solyc06g050570.1.1	Tomato	plastid	58.93	60.55
AT5G01640.1	Thale cress	plastid	57.59	57.85
GSMUA_Achr5P14320_001	Banana	plastid	48.21	57.75
GSMUA_Achr10P...	Banana	plastid	46.88	57.69
GSMUA_Achr5P07440_001	Banana	plastid	55.36	57.67
AT4G00005.1	Thale cress	extracellular, plasma membrane	30.36	57.63
CDX80758	Canola	plastid	54.91	57.48
GSMUA_Achr4P18690_001	Banana	plastid	56.25	57.01
GSMUA_Achr7P22310_001	Banana	plastid	47.77	56.91
GSMUA_Achr3P10010_001	Banana	plastid	54.02	56.02
Bra005112.1-P	Field mustard	plastid	40.62	54.17
Os12t0107600-00	Rice	plastid	52.23	53.18
Os11t0107600-01	Rice	plastid	51.79	52.73
KRH32827	Soybean	plastid	51.79	51.33
KXG22202	Sorghum	plastid	49.55	51.15
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	41.07	50.55
Zm00001d010603_P002	Maize	mitochondrion	48.66	50.23
TraesCS4B01G137300.1	Wheat	plastid	50.45	49.78
HORVU4Hr1G024530.1	Barley	plastid	50.0	49.56
Os05t0474400-01	Rice	plasma membrane, vacuole	48.66	49.55
KRH00333	Soybean	plastid	50.0	49.34
TraesCS4D01G132000.1	Wheat	plastid	50.0	49.34
CDY61529	Canola	plastid	27.68	49.21
Os01t0827400-01	Rice	extracellular, mitochondrion, plasma membrane	31.7	48.97
KRH49465	Soybean	plastid	48.66	48.88
TraesCS1A01G297900.1	Wheat	plastid	48.21	48.87
TraesCS4A01G180500.1	Wheat	plastid	49.55	48.68
TraesCS1B01G307400.1	Wheat	golgi, unclear	47.77	48.64
TraesCS1D01G293300.1	Wheat	plastid	47.77	48.42
HORVU1Hr1G070360.1	Barley	plastid	47.77	48.2
TraesCS3B01G380000.1	Wheat	plastid	45.54	47.89
TraesCS3A01G348100.1	Wheat	plastid	45.09	47.64
Zm00001d052322_P001	Maize	plastid	40.18	47.62
TraesCS3D01G341700.1	Wheat	plastid	46.43	47.06
TraesCS5B01G150200.1	Wheat	plastid	47.32	46.9
OQU82692	Sorghum	plastid	46.88	46.88
TraesCS5D01G156800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.88	46.46
TraesCS5A01G151600.1	Wheat	plastid	46.88	46.46
EES03822	Sorghum	plastid	45.98	46.19
HORVU3Hr1G088130.1	Barley	plastid	45.09	45.91
EES15518	Sorghum	plastid	47.32	45.49
Zm00001d043018_P001	Maize	mitochondrion	43.75	44.55
HORVU5Hr1G047520.1	Barley	endoplasmic reticulum, plastid	46.43	42.98
HORVU2Hr1G086930.1	Barley	cytosol, plastid	20.54	41.07
Solyc03g121460.1.1	Tomato	plastid	32.59	40.11
KXG38626	Sorghum	golgi, plasma membrane, plastid	31.25	37.84
Solyc09g066000.1.1	Tomato	mitochondrion, plastid	28.57	36.36
Solyc09g083320.1.1	Tomato	plasma membrane	24.55	32.74
Solyc07g066190.1.1	Tomato	plasma membrane, plastid	26.79	31.09
Solyc01g097230.2.1	Tomato	plastid	21.43	29.81
OQU79263	Sorghum	plastid	21.43	29.09

Protein Annotations

EnsemblPlants:Solyc10g076360.1.1	EnsemblPlantsGene:Solyc10g076360.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002769D81
UniProt:K4D1X8	MapMan:22.8.4.3.2	:	:	:	:

Description

PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:K4D1X8]

Coordinates

chr10:+:59330414..59331088

Molecular Weight (calculated)

23920.0 Da

IEP (calculated)

8.470

GRAVY (calculated)

0.496

Length

224 amino acids

Sequence
(BLAST)

001: MAAASPTPVL PISNPQTTST TVATTDTQQT VTGVGPTPAL RAFINRISET VQGGLSNRRP WAELVDRSAF AKPESVSDAT LRIRKNYSYF RTNYLSLLAV
101: VLAFSLITNP FSLILLTGLL AAWLFLYLFR PSDPPLVLFG RQFSERETLG VLIVSTVVVI FLTSVGSVLV SALMIGLAIV CTHAAFRVPE DLFLDDQESP
201: ATGFLSFLAG AAPTSGPAAV SARV

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.