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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 5
  • peroxisome 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G070360.1
HORVU1Hr1G072070.1
HORVU1Hr1G082010.3
HORVU2Hr1G086930.1
HORVU3Hr1G030760.2
HORVU3Hr1G069970.2
HORVU3Hr1G086830.7
HORVU3Hr1G088130.1
HORVU4Hr1G024530.1
HORVU4Hr1G074140.2
HORVU5Hr1G047520.1
HORVU5Hr1G112790.2
HORVU7Hr1G002080.2
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 HORVU1Hr1G072070.1 AT3G46060.1 21798944
AT2G38360.1 HORVU3Hr1G086830.7 AT3G46060.1 21798944
AT2G38360.1 HORVU5Hr1G112790.2 AT3G46060.1 21798944
AT5G01640.1 HORVU7Hr1G002080.2 AT4G25660.1 21798944
AT5G01640.1 HORVU1Hr1G070360.1 AT5G01640.1 21798944
AT5G01640.1 HORVU2Hr1G086930.1 AT5G01640.1 21798944
AT5G01640.1 HORVU3Hr1G088130.1 AT5G01640.1 21798944
AT5G01640.1 HORVU4Hr1G024530.1 AT5G01640.1 21798944
AT5G01640.1 HORVU5Hr1G047520.1 AT5G01640.1 21798944
AT5G01640.1 HORVU4Hr1G074140.2 AT5G12390.1 21798944
AT5G01640.1 HORVU1Hr1G082010.3 AT5G41600.1 21798944
AT5G01640.1 HORVU3Hr1G030760.2 AT5G41600.1 21798944
AT5G01640.1 HORVU3Hr1G069970.2 AT5G41600.1 21798944
AT5G01640.1 HORVU7Hr1G075700.2 AT5G41600.1 21798944
AT5G01640.1 HORVU7Hr1G081290.4 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G307400.1 Wheat golgi, unclear 97.3 98.18
TraesCS1D01G293300.1 Wheat plastid 96.85 97.29
TraesCS1A01G297900.1 Wheat plastid 96.4 96.83
Os05t0474400-01 Rice plasma membrane, vacuole 85.14 85.91
KXG22202 Sorghum plastid 82.43 84.33
Zm00001d010603_P002 Maize mitochondrion 81.08 82.95
HORVU3Hr1G088130.1 Barley plastid 74.32 75.0
HORVU2Hr1G086930.1 Barley cytosol, plastid 31.98 63.39
GSMUA_Achr3P10010_001 Banana plastid 57.66 59.26
GSMUA_Achr5P07440_001 Banana plastid 57.21 59.07
HORVU4Hr1G024530.1 Barley plastid 56.76 55.75
CDY63156 Canola plastid 50.9 51.83
AT2G38360.1 Thale cress plastid 50.9 51.36
CDY07736 Canola plastid 51.35 51.35
Bra000056.1-P Field mustard plastid 51.35 51.35
CDX80758 Canola plastid 48.2 50.0
KRG93818 Soybean extracellular, plasma membrane, vacuole 18.92 50.0
KRH76033 Soybean endoplasmic reticulum 48.65 49.32
PGSC0003DMT400034320 Potato plastid 45.95 48.11
Solyc10g076360.1.1 Tomato plastid 48.2 47.77
PGSC0003DMT400041063 Potato plastid 48.2 46.93
KRH49465 Soybean plastid 46.85 46.64
KRH65569 Soybean plastid 47.3 46.26
AT5G01640.1 Thale cress plastid 45.95 45.74
HORVU5Hr1G047520.1 Barley endoplasmic reticulum, plastid 48.65 44.63
CDY61529 Canola plastid 24.77 43.65
KRH00333 Soybean plastid 44.59 43.61
AT4G00005.1 Thale cress extracellular, plasma membrane 22.97 43.22
Bra005112.1-P Field mustard plastid 32.43 42.86
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 32.88 40.11
KRH32827 Soybean plastid 40.54 39.82
HORVU1Hr1G028520.1 Barley plastid 27.93 28.7
HORVU3Hr1G018940.2 Barley plastid 28.38 24.71
HORVU5Hr1G106520.1 Barley cytosol 25.23 23.93
HORVU0Hr1G013770.1 Barley mitochondrion 33.78 23.36
Protein Annotations
EnsemblPlants:HORVU1Hr1G070360.1EnsemblPlantsGene:HORVU1Hr1G070360GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317PANTHER:PTHR19317:SF12PFAM:PF03208SEG:segTMHMM:TMhelixUniParc:UPI000295A380
UniProt:M0YG19MapMan:22.8.4.3.2::::
Description
PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:M0YG19]
Coordinates
chrchr1H:-:489151928..489153445
Molecular Weight (calculated)
23254.1 Da
IEP (calculated)
9.219
GRAVY (calculated)
0.434
Length
222 amino acids
Sequence
(BLAST)
001: MASAPTQPPL LPVTNPTAAG SAPASGGGGG GGLDAPIATP AFRLFMSRIS ESARRSLSDR RPWAEMVDRS AFSRPDSLSD ATSRLRRNLT YFRVNYTAVV
101: AFALAASLLA HPFSLLILLG VLAAWCFLYI FRASDQPVAL FGRTFSDRET LLGLIVASLV AFFFTPVASL IISGMLVGGA IVAAHGAFRM PEDLFLDESD
201: AASGNSAAQG LLSFLGAPGS RV
Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.