Factsheet for HORVU1Hr1G072070.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
Predotar:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU3Hr1G018940.2
HORVU3Hr1G038200.3
HORVU3Hr1G082800.3	peroxisome
HORVU7Hr1G002080.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	HORVU3Hr1G082800.3	AT1G29260.1	23297417
AT3G46060.1	HORVU3Hr1G038200.3	AT3G06540.1	21798944
AT3G46060.1	HORVU1Hr1G028520.1	AT3G13720.1	21798944
AT3G46060.1	HORVU3Hr1G018940.2	AT3G13720.1	21798944
AT3G46060.1	HORVU7Hr1G002080.2	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72056	Canola	cytosol	53.78	96.8
Solyc06g005350.2.1	Tomato	cytosol	60.0	93.75
PGSC0003DMT400040138	Potato	cytosol	85.33	88.89
TraesCS1D01G285200.1	Wheat	cytosol	84.44	88.78
TraesCS1B01G295600.1	Wheat	cytosol	84.44	88.78
TraesCS1A01G286200.1	Wheat	cytosol	84.44	88.78
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	84.89	88.43
Zm00001d038380_P001	Maize	extracellular, plasma membrane	84.0	87.91
Zm00001d010538_P005	Maize	cytosol	84.0	87.91
EES19652	Sorghum	cytosol	84.0	87.91
KRH29838	Soybean	endoplasmic reticulum	83.56	87.85
KRH24835	Soybean	cytosol	83.11	87.38
GSMUA_Achr10P...	Banana	cytosol	83.56	87.04
GSMUA_Achr11P...	Banana	cytosol	83.56	87.04
GSMUA_Achr9P03220_001	Banana	cytosol	83.56	87.04
CDY30926	Canola	cytosol	83.11	86.57
Os05t0461300-01	Rice	plastid	83.11	86.57
VIT_06s0004g04200.t01	Wine grape	cytosol	83.11	86.57
VIT_13s0019g00520.t01	Wine grape	extracellular	83.11	86.57
Bra019475.1-P	Field mustard	cytosol	83.11	86.57
AT3G46060.1	Thale cress	cytosol	82.67	86.11
CDY31592	Canola	cytosol	82.67	86.11
PGSC0003DMT400022823	Potato	cytosol	82.67	86.11
Bra002527.1-P	Field mustard	cytosol	82.67	86.11
Solyc09g010370.2.1	Tomato	extracellular, plastid	82.67	86.11
GSMUA_AchrUn_...	Banana	cytosol	82.67	86.11
VIT_08s0040g02490.t01	Wine grape	cytosol	82.22	85.65
KRH70501	Soybean	endoplasmic reticulum	82.22	85.65
AT5G59840.1	Thale cress	cytosol	82.22	85.65
KRH01606	Soybean	endoplasmic reticulum	82.22	85.65
PGSC0003DMT400071317	Potato	cytosol	82.22	85.65
Solyc04g011360.2.1	Tomato	plastid	82.22	85.65
GSMUA_Achr6P34270_001	Banana	cytosol	82.22	85.65
CDX86045	Canola	cytosol	82.22	85.65
CDX68365	Canola	cytosol	82.22	85.65
CDX77855	Canola	cytosol	82.22	85.65
CDY71506	Canola	cytosol	82.22	85.65
KRH23030	Soybean	endoplasmic reticulum	81.78	85.58
KRH10292	Soybean	cytosol	81.78	85.58
PGSC0003DMT400008917	Potato	cytosol	81.78	85.19
KRH36193	Soybean	endoplasmic reticulum, extracellular	81.78	85.19
KRG90563	Soybean	cytosol	81.78	85.19
Bra006690.1-P	Field mustard	cytosol	81.78	85.19
CDX80224	Canola	cytosol	80.44	84.98
CDX88725	Canola	cytosol	81.33	84.72
CDX88726	Canola	cytosol	81.33	84.72
GSMUA_Achr8P02620_001	Banana	cytosol	80.89	84.26
PGSC0003DMT400049296	Potato	cytosol	80.89	84.26
Bra033830.1-P	Field mustard	cytosol	72.0	83.94
GSMUA_Achr10P...	Banana	cytosol	80.44	83.8
Solyc10g086350.1.1	Tomato	cytosol, nucleus	80.0	83.33
AT3G53610.3	Thale cress	cytosol	80.0	83.33
Bra020282.1-P	Field mustard	cytosol	80.0	83.33
CDY09249	Canola	cytosol	79.56	82.87
CDY34032	Canola	cytosol	49.78	76.19
CDY70243	Canola	cytosol	49.33	73.03
CDY07577	Canola	cytosol	80.89	68.16
CDX94925	Canola	cytosol	49.33	67.68
CDY52746	Canola	cytosol	80.44	67.29
Bra003149.1-P	Field mustard	cytosol	80.44	67.29
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	73.33	63.71
HORVU3Hr1G086830.7	Barley	cytosol	72.89	61.89
CDX99131	Canola	cytosol	82.67	60.39
HORVU3Hr1G048090.1	Barley	plasma membrane	53.33	59.11
HORVU3Hr1G010800.8	Barley	cytosol	39.56	54.6
Bra038265.1-P	Field mustard	cytosol	82.22	49.2
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	48.0	48.0
HORVU3Hr1G010780.1	Barley	plasma membrane	53.78	43.37
HORVU6Hr1G051470.1	Barley	cytosol	38.22	40.95
HORVU5Hr1G071600.3	Barley	cytosol	31.11	32.56

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	UniProt:A0A287G664	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:HORVU1Hr1G072070	EnsemblPlants:HORVU1Hr1G072070.1
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF642
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000B475467	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:+:495888700..495891450

Molecular Weight (calculated)

25395.4 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.202

Length

225 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD QKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILIGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LAETDSKPEV QIIITVLNYV
201: CPSLDHLVRC PEGFVLRFAG QNNQD

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.