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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH70501 Soybean endoplasmic reticulum 99.54 99.54
KRH36193 Soybean endoplasmic reticulum, extracellular 97.22 97.22
KRH29838 Soybean endoplasmic reticulum 95.83 96.73
KRG90563 Soybean cytosol 96.3 96.3
KRH24835 Soybean cytosol 95.37 96.26
VIT_13s0019g00520.t01 Wine grape extracellular 95.83 95.83
KRH10292 Soybean cytosol 93.98 94.42
KRH23030 Soybean endoplasmic reticulum 93.52 93.95
PGSC0003DMT400071317 Potato cytosol 92.59 92.59
GSMUA_AchrUn_... Banana cytosol 92.59 92.59
GSMUA_Achr9P03220_001 Banana cytosol 92.59 92.59
GSMUA_Achr6P34270_001 Banana cytosol 92.59 92.59
GSMUA_Achr11P... Banana cytosol 92.59 92.59
GSMUA_Achr10P... Banana cytosol 92.59 92.59
EES19652 Sorghum cytosol 92.13 92.56
Os07t0239400-01 Rice plasma membrane 92.13 92.56
Zm00001d010538_P005 Maize cytosol 92.13 92.56
Zm00001d038380_P001 Maize extracellular, plasma membrane 92.13 92.56
Solyc04g011360.2.1 Tomato plastid 92.13 92.13
Os05t0461300-01 Rice plastid 92.13 92.13
Os03t0819900-01 Rice plasma membrane 91.2 92.06
EER93195 Sorghum cytosol 90.74 91.59
GSMUA_Achr10P... Banana cytosol 91.2 91.2
Zm00001d034638_P001 Maize cytosol 90.74 91.16
TraesCS1D01G285200.1 Wheat cytosol 89.81 90.65
TraesCS1B01G295600.1 Wheat cytosol 89.81 90.65
TraesCS1A01G286200.1 Wheat cytosol 89.81 90.65
TraesCS5B01G489300.1 Wheat golgi 89.81 90.65
TraesCS5A01G476400.1 Wheat cytosol 89.35 90.19
TraesCS3A01G356000.3 Wheat plastid 89.81 89.81
GSMUA_Achr8P02620_001 Banana cytosol 89.81 89.81
TraesCS5D01G489700.1 Wheat cytosol 88.89 89.72
TraesCS3B01G388900.1 Wheat cytosol 89.35 89.35
OQU88745 Sorghum cytosol 90.74 86.73
HORVU1Hr1G072070.1 Barley cytosol 85.65 82.22
TraesCS3D01G350000.3 Wheat cytosol 89.35 81.09
HORVU5Hr1G112790.2 Barley cytosol, extracellular 82.41 68.73
KRH01059 Soybean endoplasmic reticulum 59.26 63.37
KRH40178 Soybean endoplasmic reticulum 58.8 62.87
HORVU3Hr1G086830.7 Barley cytosol 76.85 62.64
KRH66494 Soybean endoplasmic reticulum 57.87 61.58
KRH57496 Soybean endoplasmic reticulum 57.41 61.39
KRH04201 Soybean cytosol, extracellular 57.41 61.39
KRH06045 Soybean cytosol 53.24 57.21
KRH26285 Soybean endoplasmic reticulum 52.78 56.72
KRH48822 Soybean cytosol, endoplasmic reticulum 37.96 51.9
KRH11646 Soybean endoplasmic reticulum 41.67 42.65
KRH36659 Soybean cytosol 41.67 42.65
KRH58242 Soybean endoplasmic reticulum 40.74 41.71
KRG93957 Soybean endoplasmic reticulum 40.74 41.71
Protein Annotations
EntrezGene:100782753MapMan:22.8.1.5Gene3D:3.40.50.300UniProt:A0A0R0F5U2EMBL:ACUP02011523EnsemblPlantsGene:GLYMA_18G287600
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525
GO:GO:0016787EnsemblPlants:KRH01606ProteinID:KRH01606ProteinID:KRH01606.1InterPro:P-loop_NTPasePFAM:PF00071
PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF626SMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase
TIGRFAMs:TIGR00231UniParc:UPI00019AA8E9SEG:seg:::
Description
hypothetical protein
Coordinates
chr18:-:56754676..56759595
Molecular Weight (calculated)
23905.4 Da
IEP (calculated)
8.021
GRAVY (calculated)
-0.299
Length
216 amino acids
Sequence
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: ASFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNMNVEEVF FSIARDIKQR LADTDSKAEP QTIKINQPDQ
201: TATGGLAAQK SACCGS
Best Arabidopsis Sequence Match ( AT3G53610.1 )
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDS VNKILVGNKA DMDESKRAVP KSKGQALADE YGMKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDARAEP QTIKINQSDQ
201: GAGTSQATQK SACCGT
Arabidopsis Description
RABE1ARas-related protein RABE1a [Source:UniProtKB/Swiss-Prot;Acc:O24466]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.