CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96034
KRH19948
KRH32549
KRH67754

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35860.1	KRG96034	AT2G36840.1	21798944
AT4G35860.1	KRH19948	AT2G36840.1	21798944
AT4G35860.1	KRH32549	AT2G36840.1	21798944
AT4G35860.1	KRH67754	AT2G36840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93957	Soybean	endoplasmic reticulum	98.58	98.58
VIT_14s0066g00180.t01	Wine grape	cytosol	92.89	93.78
PGSC0003DMT400032908	Potato	cytosol	91.47	91.47
Solyc02g093530.2.1	Tomato	plastid	91.0	91.0
Bra011645.1-P	Field mustard	cytosol	90.05	90.05
CDX75535	Canola	cytosol	90.05	90.05
CDX69177	Canola	cytosol	90.05	90.05
CDY47039	Canola	plasma membrane	89.57	89.57
Bra017733.1-P	Field mustard	cytosol	89.57	89.57
AT4G35860.1	Thale cress	cytosol	89.1	89.1
CDX72559	Canola	cytosol	88.15	88.15
KRH11646	Soybean	endoplasmic reticulum	84.83	84.83
KRH36659	Soybean	cytosol	84.83	84.83
KRH01059	Soybean	endoplasmic reticulum	45.97	48.02
KRH40178	Soybean	endoplasmic reticulum	45.02	47.03
KRH04201	Soybean	cytosol, extracellular	44.55	46.53
KRH57496	Soybean	endoplasmic reticulum	44.55	46.53
KRH66494	Soybean	endoplasmic reticulum	43.6	45.32
KRH26285	Soybean	endoplasmic reticulum	40.76	42.79
KRH06045	Soybean	cytosol	40.28	42.29
KRH10292	Soybean	cytosol	42.65	41.86
KRH23030	Soybean	endoplasmic reticulum	42.65	41.86
KRG90563	Soybean	cytosol	42.18	41.2
KRH29838	Soybean	endoplasmic reticulum	41.71	41.12
KRH24835	Soybean	cytosol	41.71	41.12
KRH36193	Soybean	endoplasmic reticulum, extracellular	41.71	40.74
KRH70501	Soybean	endoplasmic reticulum	41.71	40.74
KRH01606	Soybean	endoplasmic reticulum	41.71	40.74
KRH48822	Soybean	cytosol, endoplasmic reticulum	29.86	39.87

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	EMBL:ACUP02003241	EnsemblPlantsGene:GLYMA_05G115000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0030100	UniProt:K7KPN3	EnsemblPlants:KRH58242	ProteinID:KRH58242
ProteinID:KRH58242.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000233A576	:	:

Description

hypothetical protein

Coordinates

chr5:+:30513287..30516952

Molecular Weight (calculated)

23442.9 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.301

Length

211 amino acids

Sequence
(BLAST)

001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVSI DSRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RDTFNHLASW
101: LEDARQHANP NMTIMLIGNK CDLSHRRAVS KEEGEQFAKE NGLLFLEASA RTAQNVEEAF IRTAGKILQN IKEGVFDVSN ESFGIKVGYG RPQGQSGARD
201: GTVSARGGCC S

Best Arabidopsis Sequence Match ( AT4G35860.1 )
(BLAST)

001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G

Arabidopsis Description

RABB1BRas-related protein RABB1b [Source:UniProtKB/Swiss-Prot;Acc:Q38922]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.