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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 2
  • golgi 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, golgi, plasma membrane
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 26746009
msms PMID: 26746009 doi
S Chen, Y Luo, G Ding, F Xu
National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY66646
CDY67381

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G35860.1 CDY66646 AT2G36840.1 21798944
AT4G35860.1 CDY67381 AT2G36840.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra017733.1-P Field mustard cytosol 100.0 100.0
CDX69177 Canola cytosol 97.63 97.63
CDX72559 Canola cytosol 97.63 97.63
CDX75535 Canola cytosol 97.63 97.63
AT4G35860.1 Thale cress cytosol 97.16 97.16
VIT_14s0066g00180.t01 Wine grape cytosol 92.42 93.3
KRG93957 Soybean endoplasmic reticulum 90.52 90.52
PGSC0003DMT400032908 Potato cytosol 90.05 90.05
Solyc02g093530.2.1 Tomato plastid 89.57 89.57
KRH58242 Soybean endoplasmic reticulum 89.57 89.57
CDY42961 Canola cytosol 87.68 87.68
CDY35596 Canola cytosol 87.68 87.68
CDY09641 Canola cytosol 87.2 87.2
CDY58166 Canola cytosol 85.31 85.71
CDY50126 Canola cytosol 85.31 85.71
CDY72056 Canola cytosol 28.44 48.0
CDX76566 Canola cytosol 45.02 47.03
CDY65880 Canola cytosol 45.02 47.03
CDY43436 Canola cytosol 44.55 46.53
CDY40564 Canola cytosol 44.55 46.53
CDY28967 Canola cytosol 44.55 46.53
CDY67887 Canola cytosol 44.55 46.31
CDX77748 Canola cytosol 44.08 46.04
CDX90468 Canola cytosol 44.08 46.04
CDY33521 Canola cytosol 44.08 46.04
CDX73855 Canola cytosol 44.55 45.63
CDY56593 Canola cytosol 44.55 45.63
CDY47919 Canola vacuole 44.08 45.15
CDY52557 Canola cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 44.08 43.66
CDY31592 Canola cytosol 43.6 42.59
CDY38404 Canola endoplasmic reticulum 44.08 42.47
CDX80224 Canola cytosol 42.18 41.78
CDY71506 Canola cytosol 42.65 41.67
CDX77855 Canola cytosol 42.65 41.67
CDX68365 Canola cytosol 42.65 41.67
CDY09249 Canola cytosol 42.65 41.67
CDY30926 Canola cytosol 42.65 41.67
CDX88726 Canola cytosol 41.71 40.74
CDX88725 Canola cytosol 41.71 40.74
CDX86045 Canola cytosol 41.71 40.74
CDY38055 Canola cytosol 45.5 40.51
CDY41572 Canola cytosol 41.71 40.37
CDY11256 Canola cytosol 41.23 40.09
CDY54609 Canola cytosol 41.23 39.91
CDX85225 Canola cytosol 29.86 39.87
CDX80871 Canola cytosol 41.23 39.01
CDY09621 Canola cytosol 43.13 37.45
CDY34032 Canola cytosol 23.22 33.33
CDY07577 Canola cytosol 41.71 32.96
CDY52746 Canola cytosol 41.71 32.71
CDY70243 Canola cytosol 22.75 31.58
CDX94925 Canola cytosol 23.22 29.88
CDX99131 Canola cytosol 41.71 28.57
Protein Annotations
MapMan:22.8.1.2Gene3D:3.40.50.300GO:A0A078ICJ5UniProt:A0A078ICJ5EnsemblPlants:CDY47039ProteinID:CDY47039
ProteinID:CDY47039.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00086645001InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449
PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF597SMART:SM00173SMART:SM00174SMART:SM00175
SMART:SM00176SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI0002540BCA
Description
BnaAnng08270DBnaAnng08270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICJ5]
Coordinates
chrLK032695:-:70708..72300
Molecular Weight (calculated)
23114.5 Da
IEP (calculated)
7.969
GRAVY (calculated)
-0.239
Length
211 amino acids
Sequence
(BLAST)
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV AGRPLKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGEQFAKE HGLLFLEASA RTAQNVEEAF IKTAAKILQN IQDGVFDVSN ESSGIKVGYG RPQGAAGGRD
201: GTISQGGGCC G
Best Arabidopsis Sequence Match ( AT4G35860.1 )
(BLAST)
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
Arabidopsis Description
RABB1BRas-related protein RABB1b [Source:UniProtKB/Swiss-Prot;Acc:Q38922]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.