CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005767.1-P	Field mustard	cytosol	100.0	100.0
AT5G03520.1	Thale cress	cytosol	97.23	97.69
CDX80871	Canola	cytosol	100.0	97.31
CDY54609	Canola	cytosol	94.47	94.04
CDY41572	Canola	cytosol	94.47	94.04
CDY72056	Canola	cytosol	52.07	90.4
CDY31592	Canola	cytosol	85.25	85.65
VIT_08s0007g04750.t01	Wine grape	cytosol	84.79	85.19
CDY30926	Canola	cytosol	84.79	85.19
CDX68365	Canola	cytosol	84.33	84.72
CDY71506	Canola	cytosol	84.33	84.72
CDX86045	Canola	cytosol	83.87	84.26
CDX77855	Canola	cytosol	83.41	83.8
CDX88725	Canola	cytosol	83.41	83.8
CDX88726	Canola	cytosol	83.41	83.8
CDX80224	Canola	cytosol	81.11	82.63
CDY09249	Canola	cytosol	80.65	81.02
EER98157	Sorghum	cytosol	78.34	78.7
CDY34032	Canola	cytosol	51.15	75.51
CDY70243	Canola	cytosol	50.69	72.37
CDY07577	Canola	cytosol	84.33	68.54
CDY52746	Canola	cytosol	83.87	67.66
CDX94925	Canola	cytosol	50.69	67.07
CDY65880	Canola	cytosol	55.76	59.9
CDX76566	Canola	cytosol	55.76	59.9
CDX99131	Canola	cytosol	84.33	59.42
CDX77748	Canola	cytosol	55.3	59.41
CDY33521	Canola	cytosol	55.3	59.41
CDY40564	Canola	cytosol	54.84	58.91
CDY43436	Canola	cytosol	54.84	58.91
CDX90468	Canola	cytosol	54.84	58.91
CDY28967	Canola	cytosol	54.84	58.91
CDY67887	Canola	cytosol	54.84	58.62
Os07t0195100-01	Rice	plasma membrane	73.27	58.24
CDY47919	Canola	vacuole	53.92	56.8
CDX73855	Canola	cytosol	53.0	55.83
CDY56593	Canola	cytosol	53.0	55.83
CDY52557	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	54.38	55.4
CDY38404	Canola	endoplasmic reticulum	54.84	54.34
CDY38055	Canola	cytosol	56.68	51.9
CDX85225	Canola	cytosol	35.48	48.73
CDY09621	Canola	cytosol	53.0	47.33
CDX75535	Canola	cytosol	41.47	42.65
CDX69177	Canola	cytosol	41.47	42.65
CDX72559	Canola	cytosol	41.01	42.18
CDY47039	Canola	plasma membrane	40.09	41.23
CDY58166	Canola	cytosol	39.63	40.95
CDY50126	Canola	cytosol	39.63	40.95
CDY09641	Canola	cytosol	39.63	40.76
CDY42961	Canola	cytosol	39.63	40.76
CDY35596	Canola	cytosol	39.63	40.76

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:A0A078FD43	UniProt:A0A078FD43	EnsemblPlants:CDY11256	ProteinID:CDY11256
ProteinID:CDY11256.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00049283001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF646	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000253FB2A	SEG:seg	:	:	:	:

Description

BnaA03g00920DBnaA03g00920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD43]

Coordinates

chrLK032010:+:395156..397129

Molecular Weight (calculated)

24094.7 Da

IEP (calculated)

8.015

GRAVY (calculated)

-0.282

Length

217 amino acids

Sequence
(BLAST)

001: MAVAPARARS DYDYLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWM KNIEQHASDN VNKILVGNKA DMDESKRAIP TAKGQALADE YGIKFFETSA KTNLNVESVF LSIAKDIKQR LTETDTKAEP QGIKITKQDA
201: ASSSSTTAEK SACCSYV

Best Arabidopsis Sequence Match ( AT5G03520.1 )
(BLAST)

001: MAVAPARARS DYDYLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWM KNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVENVF MSIAKDIKQR LTETDTKAEP QGIKITKQDT
201: AASSSTAEKS ACCSYV

Arabidopsis Description

RABE1DRAB8C [Source:UniProtKB/TrEMBL;Acc:A0A178UJN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.