CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 3
endoplasmic reticulum 3
mitochondrion 1
extracellular 2
plasma membrane 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012658.1-P	Field mustard	cytosol	100.0	100.0
CDY65880	Canola	cytosol	98.02	98.02
CDY28967	Canola	cytosol	98.02	98.02
CDX76566	Canola	cytosol	98.02	98.02
CDY40564	Canola	cytosol	98.02	98.02
CDY43436	Canola	cytosol	98.02	98.02
CDY67887	Canola	cytosol	98.02	97.54
AT4G17530.1	Thale cress	cytosol	97.52	97.52
CDY33521	Canola	cytosol	97.03	97.03
CDX77748	Canola	cytosol	97.03	97.03
CDX85225	Canola	cytosol	71.29	91.14
CDY52557	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	95.54	90.61
CDY38404	Canola	endoplasmic reticulum	95.54	88.13
CDY09621	Canola	cytosol	97.03	80.66
CDY47919	Canola	vacuole	76.24	74.76
CDY56593	Canola	cytosol	75.74	74.27
CDX73855	Canola	cytosol	75.74	74.27
CDY38055	Canola	cytosol	83.17	70.89
CDY72056	Canola	cytosol	40.59	65.6
CDX68365	Canola	cytosol	61.88	57.87
CDY71506	Canola	cytosol	61.88	57.87
CDY30926	Canola	cytosol	61.88	57.87
CDX77855	Canola	cytosol	61.39	57.41
CDX86045	Canola	cytosol	61.39	57.41
CDY31592	Canola	cytosol	60.4	56.48
CDX88726	Canola	cytosol	60.4	56.48
CDX88725	Canola	cytosol	60.4	56.48
CDY41572	Canola	cytosol	59.9	55.5
CDY11256	Canola	cytosol	58.91	54.84
CDY09249	Canola	cytosol	58.42	54.63
CDY54609	Canola	cytosol	58.91	54.59
CDX80224	Canola	cytosol	57.43	54.46
CDX80871	Canola	cytosol	58.91	53.36
CDY34032	Canola	cytosol	34.65	47.62
CDY70243	Canola	cytosol	34.65	46.05
CDY07577	Canola	cytosol	59.9	45.32
CDX72559	Canola	cytosol	47.03	45.02
CDY52746	Canola	cytosol	59.9	44.98
CDX75535	Canola	cytosol	46.53	44.55
CDX69177	Canola	cytosol	46.53	44.55
CDY50126	Canola	cytosol	46.04	44.29
CDY58166	Canola	cytosol	46.04	44.29
CDY47039	Canola	plasma membrane	46.04	44.08
CDX94925	Canola	cytosol	35.64	43.9
CDY42961	Canola	cytosol	45.54	43.6
CDY35596	Canola	cytosol	45.54	43.6
CDY09641	Canola	cytosol	45.54	43.6
CDX99131	Canola	cytosol	61.39	40.26

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:A0A078DTD3	EnsemblPlants:CDX90468	ProteinID:CDX90468	ProteinID:CDX90468.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00151083001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00025409A0

Description

BnaA03g43130D

Coordinates

chrLK031863:+:413665..415349

Molecular Weight (calculated)

22308.3 Da

IEP (calculated)

5.043

GRAVY (calculated)

-0.322

Length

202 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDQESFNNVK
101: QWLNEIDRYA SESVNKLLVG NKNDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPSGG SKPATVQIRG QPVNQQSGCC
201: SS

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.