Factsheet for AT4G17530.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G47200.1	Thale cress	cytosol	99.01	99.01
CDY65880	Canola	cytosol	99.01	99.01
CDX76566	Canola	cytosol	99.01	99.01
Bra012658.1-P	Field mustard	cytosol	97.52	97.52
CDX90468	Canola	cytosol	97.52	97.52
CDY52557	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	96.53	91.55
CDY38404	Canola	endoplasmic reticulum	96.53	89.04
AT1G02130.1	Thale cress	cytosol	84.16	83.74
CDY09621	Canola	cytosol	94.55	78.6
AT3G11730.1	Thale cress	cytosol	75.25	74.15
Bra040162.1-P	Field mustard	cytosol	96.53	71.17
AT3G46060.1	Thale cress	cytosol	61.88	57.87
AT5G59840.1	Thale cress	cytosol	61.88	57.87
AT5G03520.1	Thale cress	cytosol	60.4	56.48
AT3G53610.3	Thale cress	cytosol	59.41	55.56
AT3G09900.1	Thale cress	cytosol	59.41	55.05
AT4G17160.1	Thale cress	cytosol	48.51	47.8
AT4G35860.1	Thale cress	cytosol	48.02	45.97
AT4G17170.1	Thale cress	cytosol	47.03	45.02

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EntrezGene:827468	UniProt:A0A178USY3	ProteinID:AEE83907.1	EMBL:AF127134
EMBL:AK227290	ArrayExpress:AT4G17530	EnsemblPlantsGene:AT4G17530	RefSeq:AT4G17530	TAIR:AT4G17530	RefSeq:AT4G17530-TAIR-G
EnsemblPlants:AT4G17530.1	TAIR:AT4G17530.1	EMBL:AY052204	EMBL:AY060495	Unigene:At.48871	ProteinID:CAB10533.1
ProteinID:CAB78756.1	GO:GO:0000003	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0005829
GO:GO:0005886	GO:GO:0006810	GO:GO:0006888	GO:GO:0007275	GO:GO:0008150	GO:GO:0009506
GO:GO:0009555	GO:GO:0009653	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0015031
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0016192	GO:GO:0016787	GO:GO:0030154
GO:GO:0040007	RefSeq:NP_193486.1	ProteinID:OAO96713.1	InterPro:P-loop_NTPase	PFAM:PF00071	PO:PO:0000005
PO:PO:0000013	PO:PO:0000014	PO:PO:0000025	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001170	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0009073	PO:PO:0009074	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF666	UniProt:Q9SEH3	Symbol:RAB1C	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00000ACE97

Description

RABD2CRAB1C [Source:UniProtKB/TrEMBL;Acc:A0A178USY3]

Coordinates

chr4:-:9773548..9775676

Molecular Weight (calculated)

22319.4 Da

IEP (calculated)

5.042

GRAVY (calculated)

-0.273

Length

202 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG SKPPTVQIRG QPVNQQSGCC
201: SS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.