Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11256 | Canola | cytosol | 97.69 | 97.23 |
| Bra005767.1-P | Field mustard | cytosol | 97.69 | 97.23 |
| AT3G09900.1 | Thale cress | cytosol | 95.83 | 94.95 |
| CDX80871 | Canola | cytosol | 97.69 | 94.62 |
| VIT_08s0007g04750.t01 | Wine grape | cytosol | 85.65 | 85.65 |
| AT5G59840.1 | Thale cress | cytosol | 85.19 | 85.19 |
| AT3G53610.3 | Thale cress | cytosol | 85.19 | 85.19 |
| AT3G46060.1 | Thale cress | cytosol | 85.19 | 85.19 |
| EER98157 | Sorghum | cytosol | 79.17 | 79.17 |
| AT1G02130.1 | Thale cress | cytosol | 58.33 | 62.07 |
| AT4G17530.1 | Thale cress | cytosol | 56.48 | 60.4 |
| AT5G47200.1 | Thale cress | cytosol | 56.48 | 60.4 |
| Os07t0195100-01 | Rice | plasma membrane | 74.07 | 58.61 |
| AT3G11730.1 | Thale cress | cytosol | 52.31 | 55.12 |
| AT4G35860.1 | Thale cress | cytosol | 41.67 | 42.65 |
| AT4G17160.1 | Thale cress | cytosol | 39.81 | 41.95 |
| AT4G17170.1 | Thale cress | cytosol | 40.28 | 41.23 |
Protein Annotations
| MapMan:22.8.1.5 | Gene3D:3.40.50.300 | EntrezGene:831817 | UniProt:A0A178UJN5 | ProteinID:AED90617.1 | ProteinID:AED90618.1 |
| ArrayExpress:AT5G03520 | EnsemblPlantsGene:AT5G03520 | RefSeq:AT5G03520 | TAIR:AT5G03520 | RefSeq:AT5G03520-TAIR-G | EnsemblPlants:AT5G03520.1 |
| TAIR:AT5G03520.1 | Symbol:ATRAB8C | EMBL:AY035124 | EMBL:AY056351 | EMBL:AY087058 | ProteinID:CAB83313.1 |
| GO:GO:0000139 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009306 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0017157 | RefSeq:NP_001031827.1 |
| RefSeq:NP_195972.1 | ProteinID:OAO93933.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF646 | UniProt:Q9LZD4 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI00000A8D42 | SEG:seg | : | : | : | : |
Description
RABE1DRAB8C [Source:UniProtKB/TrEMBL;Acc:A0A178UJN5]
Coordinates
chr5:+:883311..885451
Molecular Weight (calculated)
24038.6 Da
IEP (calculated)
8.015
GRAVY (calculated)
-0.302
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAPARARS DYDYLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWM KNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVENVF MSIAKDIKQR LTETDTKAEP QGIKITKQDT
201: AASSSTAEKS ACCSYV
101: SSFNNIRNWM KNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVENVF MSIAKDIKQR LTETDTKAEP QGIKITKQDT
201: AASSSTAEKS ACCSYV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.