Factsheet for Os07t0195100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 18557835
golgi: 25047511
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98157	Sorghum	cytosol	69.23	87.5
VIT_08s0007g04750.t01	Wine grape	cytosol	59.34	75.0
Os03t0819900-01	Rice	plasma membrane	58.61	74.77
AT5G03520.1	Thale cress	cytosol	58.61	74.07
Os07t0239400-01	Rice	plasma membrane	58.24	73.95
CDY11256	Canola	cytosol	58.24	73.27
Bra005767.1-P	Field mustard	cytosol	58.24	73.27
Os05t0461300-01	Rice	plastid	57.88	73.15
AT3G09900.1	Thale cress	cytosol	58.24	72.94
CDY41572	Canola	cytosol	57.14	71.56
CDY54609	Canola	cytosol	57.14	71.56
CDX80871	Canola	cytosol	58.24	71.3
Bra029803.1-P	Field mustard	cytosol	57.88	69.91
Os01t0179700-01	Rice	plasma membrane	39.93	53.69
Os02t0653800-01	Rice	plasma membrane	39.93	53.69
Os01t0558600-01	Rice	plasma membrane	38.1	51.49
Os02t0586400-01	Rice	plasma membrane	28.57	37.14
Os04t0470100-01	Rice	plasma membrane	28.57	36.97
Os10t0208200-00	Rice	cytosol	27.11	34.91

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	ProteinID:BAF21029.1	ProteinID:BAT00461.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009306	GO:GO:0009987	GO:GO:0016787	GO:GO:0017157	EnsemblPlantsGene:Os07g0195100
EnsemblPlants:Os07t0195100-01	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF646	UniProt:Q0D7Z4	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0000E12A27	SEG:seg

Description

small GTP-binding protein OsRab8B1Similar to Ras-related protein ARA-3. (Os07t0195100-01);Similar to Ras-related protein ARA-3. (Os07t0195100-02)

Coordinates

chr7:-:5145085..5148743

Molecular Weight (calculated)

30300.9 Da

IEP (calculated)

10.560

GRAVY (calculated)

-0.338

Length

273 amino acids

Sequence
(BLAST)

001: LLPFRLFSSP LLLPSPLSTS TLTSRYQTRA HAAEIESELL ALAAAAARSA RGRRRRRAWR GLRRGRAATS TTSSSSSSSA TAAIGKSCLL LRFSDDTFTT
101: SFITTIGIDF KVRTVELDGK RVKLQIWDTA GQERFRTITT AYYRGAMGIL LVYDVTDESS FNNIRNWIRN IEQHASDNVN KILVGNKVDM DTKRVVSTAQ
201: GQKLADEYGM KFFETSAKTN QNVEQVFFTI ARDIKQRLTE TVAAAAEPPT IQISRQEPDQ AAASSRWSAC CNT

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.