Factsheet for Os02t0653800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 3
golgi 3
endoplasmic reticulum 3
mitochondrion 1
extracellular 2
plasma membrane 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0179700-01	Rice	plasma membrane	99.51	99.51
EES07529	Sorghum	cytosol	98.52	98.52
KRH04201	Soybean	cytosol, extracellular	94.09	94.55
GSMUA_Achr2P18340_001	Banana	plasma membrane	93.6	94.06
KRH57496	Soybean	endoplasmic reticulum	93.6	94.06
VIT_00s1372g00020.t01	Wine grape	cytosol	91.13	93.43
Solyc08g078070.2.1	Tomato	nucleus	93.1	93.1
TraesCS3D01G056500.1	Wheat	golgi	93.1	93.1
VIT_16s0013g00520.t01	Wine grape	extracellular	93.1	93.1
PGSC0003DMT400067463	Potato	cytosol	92.61	92.61
TraesCS3A01G056600.1	Wheat	cytosol	92.61	92.61
TraesCS3B01G070300.2	Wheat	cytosol	92.61	92.61
TraesCS3D01G056600.1	Wheat	plastid	92.61	92.61
KRH01059	Soybean	endoplasmic reticulum	92.12	92.57
TraesCS3A01G056500.1	Wheat	cytosol	91.63	91.63
GSMUA_Achr11P...	Banana	cytosol	91.13	91.13
GSMUA_Achr8P15030_001	Banana	cytosol	91.13	91.13
KRH40178	Soybean	endoplasmic reticulum	90.64	91.09
Solyc05g052070.2.1	Tomato	unclear	90.15	90.15
KRH66494	Soybean	endoplasmic reticulum	89.66	89.66
AT1G02130.1	Thale cress	cytosol	89.66	89.66
Bra017497.1-P	Field mustard	cytosol	89.16	89.6
Bra022113.1-P	Field mustard	cytosol	89.16	89.6
Bra024956.1-P	Field mustard	cytosol	89.16	89.6
HORVU3Hr1G010800.8	Barley	cytosol	71.92	89.57
PGSC0003DMT400041326	Potato	cytosol	89.16	89.16
Bra012658.1-P	Field mustard	cytosol	88.18	88.61
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	88.18	88.18
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.18	88.18
Os01t0558600-01	Rice	plasma membrane	85.22	85.64
TraesCS3A01G056800.1	Wheat	cytosol	79.31	85.19
Solyc01g090170.2.1	Tomato	unclear	82.76	82.76
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	91.13	81.5
KRH48822	Soybean	cytosol, endoplasmic reticulum	61.08	78.48
CDY38055	Canola	cytosol	89.16	76.37
Zm00001d051336_P001	Maize	plastid	96.06	71.69
TraesCS3A01G056900.1	Wheat	mitochondrion	58.62	71.26
HORVU3Hr1G010780.1	Barley	plasma membrane	93.1	67.74
GSMUA_Achr7P06570_001	Banana	cytosol	90.64	66.91
Bra040162.1-P	Field mustard	cytosol	86.7	64.23
VIT_15s0021g01410.t01	Wine grape	cytosol	63.05	62.44
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	92.12	62.13
TraesCS3A01G056700.1	Wheat	cytosol	77.83	61.96
Os03t0819900-01	Rice	plasma membrane	61.58	58.41
Os07t0239400-01	Rice	plasma membrane	61.58	58.14
Os05t0461300-01	Rice	plastid	61.08	57.41
Zm00001d017456_P003	Maize	cytosol	96.55	48.88
Os04t0470100-01	Rice	plasma membrane	46.31	44.55
Os02t0586400-01	Rice	plasma membrane	45.81	44.29
Os10t0208200-00	Rice	cytosol	42.36	40.57
Os07t0195100-01	Rice	plasma membrane	53.69	39.93

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EntrezGene:4330181	EMBL:AK243329	ProteinID:BAD24987.1	ProteinID:BAF09520.2
ProteinID:BAS80077.1	ProteinID:EEE57492.1	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0006810	GO:GO:0006888
GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	EnsemblPlantsGene:Os02g0653800	EnsemblPlants:Os02t0653800-01	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	UniProt:Q6H8G2
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00000AB4BE	RefSeq:XP_015627530.1	RefSeq:XP_015627531.1

Description

small GTP-binding protein OsRab1C3Similar to GTP-binding protein. (Os02t0653800-01)

Coordinates

chr2:+:26365902..26370471

Molecular Weight (calculated)

22505.6 Da

IEP (calculated)

5.326

GRAVY (calculated)

-0.308

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDQESFNNVK
101: QWLNEIDRYA SDNVNKLLVG NKSDLTANKV VSSETAKAFA DEMGIPFMET SAKNATNVEQ AFMAMAASIK DRMASQPAAA NARPPTVQIR GQPVNQKTSC
201: CSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.