Factsheet for Bra024956.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra019100.1-P
Bra026423.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47200.1	Bra010452.1-P	AT4G25660.1	21798944
AT5G47200.1	Bra013908.1-P	AT4G25660.1	21798944
AT5G47200.1	Bra013910.1-P	AT4G25660.1	21798944
AT5G47200.1	Bra019100.1-P	AT4G26550.1	21798944
AT5G47200.1	Bra026423.1-P	AT4G26550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77748	Canola	cytosol	100.0	100.0
CDY33521	Canola	cytosol	100.0	100.0
Bra022113.1-P	Field mustard	cytosol	99.01	99.01
Bra017497.1-P	Field mustard	cytosol	99.01	99.01
AT5G47200.1	Thale cress	cytosol	98.51	98.51
Bra012658.1-P	Field mustard	cytosol	97.03	97.03
PGSC0003DMT400067463	Potato	cytosol	90.59	90.15
Solyc08g078070.2.1	Tomato	nucleus	90.59	90.15
KRH57496	Soybean	endoplasmic reticulum	90.1	90.1
KRH04201	Soybean	cytosol, extracellular	90.1	90.1
VIT_00s1372g00020.t01	Wine grape	cytosol	88.12	89.9
Os02t0653800-01	Rice	plasma membrane	89.6	89.16
Os01t0179700-01	Rice	plasma membrane	89.6	89.16
EES07529	Sorghum	cytosol	89.11	88.67
VIT_16s0013g00520.t01	Wine grape	extracellular	89.11	88.67
GSMUA_Achr11P...	Banana	cytosol	89.11	88.67
GSMUA_Achr2P18340_001	Banana	plasma membrane	88.61	88.61
GSMUA_Achr8P15030_001	Banana	cytosol	88.61	88.18
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.61	88.18
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	88.61	88.18
TraesCS3A01G056600.1	Wheat	cytosol	86.63	86.21
TraesCS3B01G070300.2	Wheat	cytosol	86.63	86.21
TraesCS3D01G056500.1	Wheat	golgi	86.63	86.21
TraesCS3D01G056600.1	Wheat	plastid	86.63	86.21
PGSC0003DMT400041326	Potato	cytosol	86.14	85.71
Solyc05g052070.2.1	Tomato	unclear	86.14	85.71
KRH01059	Soybean	endoplasmic reticulum	85.64	85.64
KRH66494	Soybean	endoplasmic reticulum	85.64	85.22
KRH40178	Soybean	endoplasmic reticulum	85.15	85.15
Solyc01g090170.2.1	Tomato	unclear	85.15	84.73
TraesCS3A01G056500.1	Wheat	cytosol	85.15	84.73
HORVU3Hr1G010800.8	Barley	cytosol	66.34	82.21
TraesCS3A01G056800.1	Wheat	cytosol	73.27	78.31
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	85.64	76.21
KRH48822	Soybean	cytosol, endoplasmic reticulum	58.91	75.32
Bra038676.1-P	Field mustard	vacuole	74.75	73.3
Bra001418.1-P	Field mustard	cytosol, extracellular	74.75	73.3
Bra040162.1-P	Field mustard	cytosol	95.05	70.07
TraesCS3A01G056900.1	Wheat	mitochondrion	54.46	65.87
GSMUA_Achr7P06570_001	Banana	cytosol	89.6	65.82
Zm00001d051336_P001	Maize	plastid	86.63	64.34
HORVU3Hr1G010780.1	Barley	plasma membrane	86.63	62.72
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	90.1	60.47
TraesCS3A01G056700.1	Wheat	cytosol	74.75	59.22
VIT_15s0021g01410.t01	Wine grape	cytosol	58.91	58.05
Bra019475.1-P	Field mustard	cytosol	61.88	57.87
Bra002527.1-P	Field mustard	cytosol	60.89	56.94
Bra006690.1-P	Field mustard	cytosol	60.4	56.48
Bra020282.1-P	Field mustard	cytosol	59.9	56.02
Bra033830.1-P	Field mustard	cytosol	53.47	55.96
Bra005767.1-P	Field mustard	cytosol	59.41	55.3
Bra029803.1-P	Field mustard	cytosol	58.42	52.21
Bra003149.1-P	Field mustard	cytosol	60.4	45.35
Bra011645.1-P	Field mustard	cytosol	46.53	44.55
Bra021065.1-P	Field mustard	cytosol	46.04	44.29
Bra017733.1-P	Field mustard	cytosol	46.04	44.08
Zm00001d017456_P003	Maize	cytosol	87.13	43.89
Bra026231.1-P	Field mustard	cytosol	45.54	43.6
Bra038265.1-P	Field mustard	cytosol	61.39	32.98

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra024956	EnsemblPlants:Bra024956.1	EnsemblPlants:Bra024956.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4E850	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00019AA8BD	:

Description

AT5G47200 (E=1e-111) ATRABD2B, ATRAB1A | ATRAB1A; GTP binding

Coordinates

chrA06:-:24389779..24391564

Molecular Weight (calculated)

22315.3 Da

IEP (calculated)

4.850

GRAVY (calculated)

-0.324

Length

202 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAQAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG AKPPTVNIRG QPVNQQSGCC
201: SS

Best Arabidopsis Sequence Match ( AT5G47200.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG AKPPTVQIRG QPVNQQSGCC
201: SS

Arabidopsis Description

RABD2BRas-related protein RABD2b [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.