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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plasma membrane 1
  • plastid 1
  • extracellular 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:extracellular, nucleus, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000056.1-P
Bra000204.1-P
Bra000891.1-P
Bra000895.1-P
Bra002620.1-P
Bra003171.1-P
Bra003923.1-P
Bra005112.1-P
Bra005924.1-P
Bra006345.1-P
Bra007047.1-P
Bra008348.1-P
Bra008559.1-P
Bra008630.1-P
Bra009807.1-P
Bra009809.1-P
Bra010452.1-P
Bra011434.1-P
Bra012646.1-P
Bra012647.1-P
Bra013601.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra014221.1-P
Bra014355.1-P
Bra015626.1-P
Bra016705.1-P
Bra019660.1-P
Bra020855.1-P
Bra021502.1-P
Bra021503.1-P
Bra021504.1-P
Bra021674.1-P
Bra021912.1-P
Bra022817.1-P
Bra023359.1-P
Bra023936.1-P
Bra024951.1-P
Bra027406.1-P
Bra027937.1-P
Bra028632.1-P
Bra032216.1-P
Bra035731.1-P
Bra036294.1-P
Bra036529.1-P
Bra037983.1-P
Bra038169.1-P
Bra039652.1-P
Bra040177.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25660.1 Bra016705.1-P AT1G14340.1 21798944
AT4G25660.1 Bra019660.1-P AT1G14340.1 21798944
AT4G25660.1 Bra014069.1-P AT1G47260.1 21798944
AT4G25660.1 Bra032216.1-P AT1G47260.1 21798944
AT4G25660.1 Bra014221.1-P AT1G49850.1 21798944
AT4G25660.1 Bra039652.1-P AT1G49850.1 21798944
AT4G25660.1 Bra014355.1-P AT1G55190.1 21798944
AT4G25660.1 Bra037983.1-P AT1G55190.1 21798944
AT4G25660.1 Bra003923.1-P AT1G71480.1 21798944
AT4G25660.1 Bra008348.1-P AT1G78140.1 21798944
AT4G25660.1 Bra015626.1-P AT1G78140.1 21798944
AT4G25660.1 Bra021674.1-P AT2G30880.1 21798944
AT4G25660.1 Bra022817.1-P AT2G30880.1 21798944
AT4G25660.1 Bra021912.1-P AT2G34460.1 21798944
AT4G25660.1 Bra000056.1-P AT2G38360.1 21798944
AT4G25660.1 Bra005112.1-P AT2G38360.1 21798944
AT4G25660.1 Bra000204.1-P AT2G40765.1 21798944
AT4G25660.1 Bra021504.1-P AT3G13710.1 21798944
AT4G25660.1 Bra027406.1-P AT3G13710.1 21798944
AT4G25660.1 Bra023936.1-P AT3G20680.1 21798944
AT4G25660.1 Bra003171.1-P AT3G54120.1 21798944
AT4G25660.1 Bra007047.1-P AT3G54120.1 21798944
AT4G25660.1 Bra000895.1-P AT4G02080.1 21798944
AT4G25660.1 Bra036294.1-P AT4G02080.1 21798944
AT4G25660.1 Bra000891.1-P AT4G02150.1 21798944
AT4G25660.1 Bra008559.1-P AT4G02150.1 21798944
AT4G25660.1 Bra012646.1-P AT4G17720.1 21798944
AT4G25660.1 Bra012647.1-P AT4G17720.1 21798944
AT4G25660.1 Bra040177.1-P AT4G17720.1 21798944
AT4G25660.1 Bra013601.1-P AT4G22220.1 21798944
AT4G25660.1 Bra020855.1-P AT4G22220.1 21798944
AT4G25660.1 Bra010452.1-P AT4G25660.1 21798944
AT4G25660.1 Bra013908.1-P AT4G25660.1 21798944
AT4G25660.1 Bra013910.1-P AT4G25660.1 21798944
AT4G25660.1 Bra028632.1-P AT5G09450.1 21798944
AT4G25660.1 Bra023359.1-P AT5G12010.1 21798944
AT4G25660.1 Bra006345.1-P AT5G16250.1 21798944
AT4G25660.1 Bra008630.1-P AT5G16250.1 21798944
AT4G25660.1 Bra009807.1-P AT5G24990.1 21798944
AT4G25660.1 Bra009809.1-P AT5G24990.1 21798944
AT4G25660.1 Bra036529.1-P AT5G24990.1 21798944
AT4G25660.1 Bra024951.1-P AT5G47310.1 21798944
AT4G25660.1 Bra035731.1-P AT5G51180.1 21798944
AT4G25660.1 Bra002620.1-P AT5G58750.1 21798944
AT4G25680.1 Bra027937.1-P AT1G56330.1 21798944
AT4G25680.1 Bra038169.1-P AT1G56330.1 21798944
AT4G25680.1 Bra021674.1-P AT2G30880.1 21798944
AT4G25680.1 Bra022817.1-P AT2G30880.1 21798944
AT4G25680.1 Bra000056.1-P AT2G38360.1 21798944
AT4G25680.1 Bra005112.1-P AT2G38360.1 21798944
AT4G25680.1 Bra021504.1-P AT3G13710.1 21798944
AT4G25680.1 Bra027406.1-P AT3G13710.1 21798944
AT4G25680.1 Bra021502.1-P AT3G13720.1 21798944
AT4G25680.1 Bra021503.1-P AT3G13720.1 21798944
AT4G25680.1 Bra010452.1-P AT4G25660.1 21798944
AT4G25680.1 Bra013908.1-P AT4G25660.1 21798944
AT4G25680.1 Bra013910.1-P AT4G25660.1 21798944
AT4G25680.1 Bra010452.1-P AT4G25680.1 21798944
AT4G25680.1 Bra013908.1-P AT4G25680.1 21798944
AT4G25680.1 Bra013910.1-P AT4G25680.1 21798944
AT4G25680.1 Bra011434.1-P AT4G33350.1 21798944
AT4G25680.1 Bra005924.1-P AT5G07110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89404 Canola cytosol 99.18 99.18
CDX94429 Canola cytosol 97.55 97.55
AT4G25680.1 Thale cress cytosol 84.08 81.75
AT4G25660.1 Thale cress cytosol 84.08 80.78
Bra010452.1-P Field mustard cytosol 82.04 79.13
Bra013910.1-P Field mustard cytosol 80.41 78.49
KRH08874 Soybean cytosol 64.9 64.9
VIT_16s0050g01050.t01 Wine grape cytosol 64.08 64.61
KRH38387 Soybean cytosol 64.49 63.71
GSMUA_AchrUn_... Banana cytosol 57.55 56.85
KRH35244 Soybean cytosol, peroxisome, plastid 48.57 49.58
Zm00001d045580_P001 Maize cytosol 53.06 48.51
EER87703 Sorghum cytosol 52.65 48.13
Os06t0107000-01 Rice cytosol, nucleus 52.65 47.78
HORVU7Hr1G002080.2 Barley cytosol 37.55 46.7
TraesCS7A01G019000.1 Wheat cytosol 55.1 45.92
PGSC0003DMT400018924 Potato cytosol 39.18 45.28
TraesCSU01G065800.1 Wheat cytosol 54.69 45.27
Solyc02g082060.1.1 Tomato cytosol 38.37 44.13
TraesCS7D01G016100.1 Wheat nucleus 55.1 41.54
Bra009823.1-P Field mustard cytosol, mitochondrion 23.67 26.36
Bra035161.1-P Field mustard cytosol 24.49 26.32
Bra020487.1-P Field mustard mitochondrion 22.86 25.93
Bra003580.1-P Field mustard cytosol 23.27 25.0
Bra011312.1-P Field mustard nucleus 22.86 24.35
Bra032034.1-P Field mustard nucleus, plasma membrane 23.27 22.89
Bra012661.1-P Field mustard cytosol 18.37 21.03
Bra024951.1-P Field mustard cytosol 20.41 20.58
Bra014091.1-P Field mustard nucleus 21.22 18.51
Bra032229.1-P Field mustard nucleus 20.0 17.56
Bra007813.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole 23.67 10.58
Protein Annotations
EnsemblPlants:Bra013908.1EnsemblPlants:Bra013908.1-PEnsemblPlantsGene:Bra013908Gene3D:3.90.1720.30InterPro:PPPDE_domPANTHER:PTHR12378
PANTHER:PTHR12378:SF9PFAM:PF05903SEG:segSMART:SM01179UniParc:UPI0002546A0BUniProt:M4DBP8
MapMan:19.4.1.7:::::
Description
AT4G25680 (E=4e-115) | unknown protein
Coordinates
chrA01:+:8398053..8399266
Molecular Weight (calculated)
27430.2 Da
IEP (calculated)
6.774
GRAVY (calculated)
-0.509
Length
245 amino acids
Sequence
(BLAST)
001: MAEVVVHIYD VTNTGSDKTN NTILQINRIF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFRCPSSK NPMYTYREKI VLGRTDCTIF MVNQIFRELT
101: REWPGHTYDL LSRNCNHFCD VLCDRLGVPK LPGWVNRFAH AGDTALEVAE TTAMRLKQAK TELLSASKVA YRFLSNVTSS VTNSTNGSPQ QPGTVNNSDN
201: VNSRMQGTWL KGMLNTSKPS TSTEIEKKDE DANHDSEVLQ FQQQP
Best Arabidopsis Sequence Match ( AT4G25680.1 )
(BLAST)
001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
Arabidopsis Description
At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.