Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G25680.1 | Thale cress | cytosol | 92.55 | 93.65 |
| CDX89404 | Canola | cytosol | 81.57 | 84.9 |
| CDX89402 | Canola | cytosol | 83.53 | 84.86 |
| CDY66007 | Canola | cytosol | 84.31 | 84.65 |
| Bra010452.1-P | Field mustard | cytosol | 84.31 | 84.65 |
| CDX94426 | Canola | cytosol | 83.53 | 84.52 |
| Bra013910.1-P | Field mustard | cytosol | 83.14 | 84.46 |
| CDX94429 | Canola | cytosol | 80.78 | 84.08 |
| Bra013908.1-P | Field mustard | cytosol | 80.78 | 84.08 |
| CDY49480 | Canola | cytosol | 82.75 | 83.4 |
| KRH08874 | Soybean | cytosol | 69.41 | 72.24 |
| KRH38387 | Soybean | cytosol | 68.63 | 70.56 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 65.49 | 68.72 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.51 | 56.05 |
| KRH35244 | Soybean | cytosol, peroxisome, plastid | 49.41 | 52.5 |
| EER87703 | Sorghum | cytosol | 51.76 | 49.25 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 51.76 | 48.89 |
| Zm00001d045580_P001 | Maize | cytosol | 51.37 | 48.88 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 36.08 | 46.7 |
| PGSC0003DMT400018924 | Potato | cytosol | 38.04 | 45.75 |
| Solyc02g082060.1.1 | Tomato | cytosol | 38.04 | 45.54 |
| TraesCS7A01G019000.1 | Wheat | cytosol | 50.98 | 44.22 |
| TraesCSU01G065800.1 | Wheat | cytosol | 50.2 | 43.24 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 50.59 | 39.69 |
| AT5G25170.1 | Thale cress | cytosol, mitochondrion | 23.53 | 27.52 |
| AT1G80690.2 | Thale cress | cytosol | 24.31 | 26.84 |
| AT2G25190.1 | Thale cress | nucleus, vacuole | 23.53 | 25.0 |
| AT4G17486.1 | Thale cress | cytosol | 20.0 | 22.77 |
| AT5G47310.1 | Thale cress | cytosol | 21.18 | 22.04 |
| AT1G47740.3 | Thale cress | nucleus | 21.18 | 19.35 |
Protein Annotations
| MapMan:19.4.1.7 | Gene3D:3.90.1720.30 | EntrezGene:828671 | ProteinID:AEE85090.1 | ArrayExpress:AT4G25660 | EnsemblPlantsGene:AT4G25660 |
| RefSeq:AT4G25660 | TAIR:AT4G25660 | RefSeq:AT4G25660-TAIR-G | EnsemblPlants:AT4G25660.1 | TAIR:AT4G25660.1 | EMBL:BT002000 |
| EMBL:BT010326 | ProteinID:CAB43697.1 | ProteinID:CAB81376.1 | GO:GO:0008150 | RefSeq:NP_194296.1 | PFAM:PF05903 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| InterPro:PPPDE_dom | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF9 | UniProt:Q9SZZ4 | SMART:SM01179 | UniParc:UPI00000AC4E4 |
| SEG:seg | : | : | : | : | : |
Description
At4g25660 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ4]
Coordinates
chr4:+:13083407..13085596
Molecular Weight (calculated)
28157.1 Da
IEP (calculated)
8.124
GRAVY (calculated)
-0.476
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.