CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER89059
EER89408
EER95307
EER95706
EES00126
EES00709
EES02699
EES03388
EES03822
EES03891
EES04034
EES05791
EES07522
EES10908
EES11216
EES12769
EES12950
EES14971
EES15131
EES15193
EES15518
EES18467
EES19766
KXG22202
KXG22553
KXG23692
KXG23810
KXG28257
KXG32164
KXG32187
KXG34371
KXG37877
KXG38626
KXG40432
OQU76985
OQU77594
OQU78555
OQU79263
OQU79861
OQU81867
OQU82692
OQU85574

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25660.1	EES12950	AT1G14340.1	21798944
AT4G25660.1	EER95307	AT1G49850.1	21798944
AT4G25660.1	KXG23810	AT1G49850.1	21798944
AT4G25660.1	EES00126	AT1G55190.1	21798944
AT4G25660.1	OQU77594	AT1G55190.1	21798944
AT4G25660.1	KXG32164	AT1G71480.1	21798944
AT4G25660.1	KXG40432	AT1G71480.1	21798944
AT4G25660.1	EES14971	AT1G78140.1	21798944
AT4G25660.1	KXG34371	AT2G30880.1	21798944
AT4G25660.1	KXG37877	AT2G30880.1	21798944
AT4G25660.1	EES15131	AT2G34460.1	21798944
AT4G25660.1	EES03822	AT2G38360.1	21798944
AT4G25660.1	EES15518	AT2G38360.1	21798944
AT4G25660.1	KXG22202	AT2G38360.1	21798944
AT4G25660.1	KXG38626	AT2G38360.1	21798944
AT4G25660.1	OQU79263	AT2G38360.1	21798944
AT4G25660.1	OQU82692	AT2G38360.1	21798944
AT4G25660.1	EES00126	AT3G13710.1	21798944
AT4G25660.1	OQU77594	AT3G13710.1	21798944
AT4G25660.1	EES19766	AT3G20680.1	21798944
AT4G25660.1	EES03891	AT3G54120.1	21798944
AT4G25660.1	OQU78555	AT3G54120.1	21798944
AT4G25660.1	EES00709	AT4G02080.1	21798944
AT4G25660.1	EES02699	AT4G02080.1	21798944
AT4G25660.1	EES15193	AT4G02080.1	21798944
AT4G25660.1	KXG23692	AT4G02080.1	21798944
AT4G25660.1	KXG28257	AT4G02080.1	21798944
AT4G25660.1	KXG32187	AT4G02150.1	21798944
AT4G25660.1	EER89059	AT4G17720.1	21798944
AT4G25660.1	EES12769	AT4G17720.1	21798944
AT4G25660.1	OQU85574	AT4G17720.1	21798944
AT4G25660.1	EES03388	AT4G22220.1	21798944
AT4G25660.1	KXG22553	AT4G22220.1	21798944
AT4G25660.1	EER87703	AT4G25660.1	21798944
AT4G25660.1	EES10908	AT5G09450.1	21798944
AT4G25660.1	EES04034	AT5G16250.1	21798944
AT4G25660.1	EES18467	AT5G16250.1	21798944
AT4G25660.1	OQU81867	AT5G16250.1	21798944
AT4G25660.1	OQU76985	AT5G24990.1	21798944
AT4G25660.1	EER95706	AT5G47310.1	21798944
AT4G25660.1	EES07522	AT5G47310.1	21798944
AT4G25660.1	EES11216	AT5G47310.1	21798944
AT4G25660.1	EES05791	AT5G51180.1	21798944
AT4G25660.1	OQU79861	AT5G51180.1	21798944
AT4G25680.1	EES00709	AT1G56330.1	21798944
AT4G25680.1	EES02699	AT1G56330.1	21798944
AT4G25680.1	EES15193	AT1G56330.1	21798944
AT4G25680.1	KXG23692	AT1G56330.1	21798944
AT4G25680.1	KXG28257	AT1G56330.1	21798944
AT4G25680.1	KXG34371	AT2G30880.1	21798944
AT4G25680.1	KXG37877	AT2G30880.1	21798944
AT4G25680.1	EES03822	AT2G38360.1	21798944
AT4G25680.1	EES15518	AT2G38360.1	21798944
AT4G25680.1	KXG22202	AT2G38360.1	21798944
AT4G25680.1	KXG38626	AT2G38360.1	21798944
AT4G25680.1	OQU79263	AT2G38360.1	21798944
AT4G25680.1	OQU82692	AT2G38360.1	21798944
AT4G25680.1	EES00126	AT3G13710.1	21798944
AT4G25680.1	OQU77594	AT3G13710.1	21798944
AT4G25680.1	EES00126	AT3G13720.1	21798944
AT4G25680.1	OQU77594	AT3G13720.1	21798944
AT4G25680.1	EER87703	AT4G25660.1	21798944
AT4G25680.1	EER87703	AT4G25680.1	21798944
AT4G25680.1	EER89408	AT4G33350.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045580_P001	Maize	cytosol	91.79	91.79
Os06t0107000-01	Rice	cytosol, nucleus	70.9	70.37
TraesCS7A01G019000.1	Wheat	cytosol	69.4	63.27
TraesCSU01G065800.1	Wheat	cytosol	68.28	61.82
VIT_16s0050g01050.t01	Wine grape	cytosol	51.49	56.79
TraesCS7D01G016100.1	Wheat	nucleus	68.66	56.62
GSMUA_AchrUn_...	Banana	cytosol	51.87	56.05
Bra013910.1-P	Field mustard	cytosol	51.87	55.38
CDX89402	Canola	cytosol	51.87	55.38
CDX94426	Canola	cytosol	51.87	55.16
KRH08874	Soybean	cytosol	50.37	55.1
HORVU7Hr1G002080.2	Barley	cytosol	40.3	54.82
EER94588	Sorghum	cytosol	50.0	54.69
KRH38387	Soybean	cytosol	49.63	53.63
CDY66007	Canola	cytosol	50.75	53.54
Bra010452.1-P	Field mustard	cytosol	50.75	53.54
CDX94429	Canola	cytosol	48.13	52.65
CDX89404	Canola	cytosol	48.13	52.65
Bra013908.1-P	Field mustard	cytosol	48.13	52.65
CDY49480	Canola	cytosol	49.63	52.57
AT4G25660.1	Thale cress	cytosol	49.25	51.76
AT4G25680.1	Thale cress	cytosol	48.51	51.59
Solyc02g082060.1.1	Tomato	cytosol	33.96	42.72
KRH35244	Soybean	cytosol, peroxisome, plastid	38.06	42.5
PGSC0003DMT400018924	Potato	cytosol	33.58	42.45
EER89945	Sorghum	cytosol	20.15	25.59
EES11216	Sorghum	cytosol	19.03	24.52
EER95329	Sorghum	mitochondrion	22.76	24.21
EER95706	Sorghum	mitochondrion	19.78	22.65
KXG39054	Sorghum	plastid	20.9	22.58
EES07522	Sorghum	cytosol	17.54	22.49
KXG19474	Sorghum	plastid	21.64	22.14

Protein Annotations

EnsemblPlants:EER87703	EnsemblPlantsGene:SORBI_3010G005100	EntrezGene:8066876	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF18	PFAM:PF05903	ProteinID:EER87703	ProteinID:EER87703.1	RefSeq:XP_002436336.1	SEG:seg
SMART:SM01179	UniParc:UPI0001A89513	UniProt:C5Z264	MapMan:19.4.1.7	:	:

Description

hypothetical protein

Coordinates

chr10:+:431051..434914

Molecular Weight (calculated)

28909.5 Da

IEP (calculated)

4.870

GRAVY (calculated)

-0.435

Length

268 amino acids

Sequence
(BLAST)

001: MGQDVVAHVY DVATAGSDTT VLHINRFFKD GLGLGGIFHT AIQVYGDEEW SFGYCERGTG VFSCPPCKNP MYTYRESIVL GKTNCCILKV NQILRELSWE
101: WPGQSYELLS RNCNHFCNTF CEKLEVPKLP GWVNRFANAG DAALDVAETT AVKLKQAKKE IVTACKAAST FLTGTSSSSS SNAEDMGGST SSGNSLFEGA
201: WIRSIVGMTI KPSKSLVCVD SSDSDSSESE SVSDGDRPNS DDNAEQQAKG ATQEPGTKNE NNKPQGHS

Best Arabidopsis Sequence Match ( AT4G25680.1 )
(BLAST)

001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ

Arabidopsis Description

At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.