CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19991
OQU87227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78140.1	EES19991	AT3G18570.1	21798944
AT1G78140.1	OQU87227	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032301_P008	Maize	plastid	56.82	84.75
TraesCS6B01G298300.1	Wheat	plastid	71.02	69.44
Os08t0411200-01	Rice	mitochondrion	70.45	69.27
TraesCS6D01G243900.1	Wheat	plastid	71.02	68.87
TraesCS6A01G271200.2	Wheat	plastid	69.6	68.06
KRH53082	Soybean	cytosol, mitochondrion	38.92	64.93
HORVU2Hr1G078410.1	Barley	plastid	69.32	64.21
HORVU6Hr1G068670.1	Barley	plastid	67.9	60.51
GSMUA_Achr4P01800_001	Banana	mitochondrion	54.55	54.08
VIT_18s0001g05440.t01	Wine grape	mitochondrion	53.69	54.0
CDY26853	Canola	plastid	51.99	53.67
CDY14625	Canola	plastid	51.42	53.39
Bra008348.1-P	Field mustard	plastid	51.7	53.37
AT1G78140.1	Thale cress	plastid	51.7	51.27
KRH62365	Soybean	plastid	51.14	51.14
CDX88421	Canola	plastid	49.15	49.01
Bra015626.1-P	Field mustard	plastid	48.3	48.85
EER90112	Sorghum	plastid	48.3	48.3
CDX87473	Canola	golgi, mitochondrion, plastid	48.01	47.47

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	EntrezGene:8070071	UniProt:C5YKU1	EnsemblPlants:EES14971	ProteinID:EES14971
ProteinID:EES14971.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009507	GO:GO:0009536
GO:GO:0010287	GO:GO:0016740	GO:GO:0032259	InterPro:Methyltransf_11	PFAM:PF08241	PANTHER:PTHR43591
PANTHER:PTHR43591:SF19	InterPro:SAM-dependent_MTases	EnsemblPlantsGene:SORBI_3007G124500	SUPFAM:SSF53335	unigene:Sbi.7310	UniParc:UPI0001A87A2F
RefSeq:XP_002445476.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:53382984..53387034

Molecular Weight (calculated)

38372.8 Da

IEP (calculated)

6.947

GRAVY (calculated)

-0.016

Length

352 amino acids

Sequence
(BLAST)

001: MAALGTATTP AAAPGAPRCY NRHPRPRHHI AARRNRVASA RRLDLCASAS PSPAVTAPDI PDEAVEEPLV EPAAETKLRK LACPICYYPL AGSSDQSDDA
101: SSLECSTCKK SYPNKQDYWD LTVSVGSIEY SESMPAATEL FRTPLVSFLY ERGWRQNFIW GGFPGLEREF EMAKTYLKPT FGGTIVDASC GSGLFSRLFV
201: KSGLYSLVVA LDFSENMLKQ CNEYIKQENI SDERLALVRA DISRLPFVSG SIDAVHAGAA IHCWPSPACA VADISRVLRP GGVFVASTFV ADVIPPVIPV
301: LRIGRPYISQ ITGNNTFLSE VEFEDLCKAC GLVDFKFVRS GFYIMFSATK AS

Best Arabidopsis Sequence Match ( AT1G78140.1 )
(BLAST)

001: MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS
101: GIQVQCNTCK RSYSGNETHL DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP VLGGNIIDAS CGSGMFSRLF
201: TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF
301: IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

Arabidopsis Description

Uncharacterized methyltransferase At1g78140, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LBV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.