CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75969
CDX82338
CDX92248
CDX95515
CDX99345
CDY06745
CDY18527

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78140.1	CDX75969	AT3G18570.1	21798944
AT1G78140.1	CDX82338	AT3G18570.1	21798944
AT1G78140.1	CDX92248	AT3G18570.1	21798944
AT1G78140.1	CDX95515	AT3G18570.1	21798944
AT1G78140.1	CDX99345	AT3G18570.1	21798944
AT1G78140.1	CDY06745	AT3G18570.1	21798944
AT1G78140.1	CDY18527	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015626.1-P	Field mustard	plastid	95.79	97.99
CDX88421	Canola	plastid	91.01	91.78
CDY14625	Canola	plastid	71.63	75.22
CDY26853	Canola	plastid	70.79	73.9
KRH53082	Soybean	cytosol, mitochondrion	42.7	72.04
AT1G78140.1	Thale cress	plastid	69.94	70.14
VIT_18s0001g05440.t01	Wine grape	mitochondrion	54.49	55.43
KRH62365	Soybean	plastid	53.65	54.26
GSMUA_Achr4P01800_001	Banana	mitochondrion	53.37	53.52
TraesCS6B01G298300.1	Wheat	plastid	51.69	51.11
TraesCS6A01G271200.2	Wheat	plastid	51.12	50.56
Os08t0411200-01	Rice	mitochondrion	50.28	50.0
TraesCS6D01G243900.1	Wheat	plastid	50.56	49.59
EES14971	Sorghum	plastid	47.47	48.01
HORVU2Hr1G078410.1	Barley	plastid	50.84	47.63
HORVU6Hr1G068670.1	Barley	plastid	50.0	45.06
Zm00001d032301_P008	Maize	plastid	27.53	41.53
CDY57579	Canola	plastid	40.17	40.51
CDY06948	Canola	nucleus	40.73	18.12

Protein Annotations

EnsemblPlants:CDX87473	EnsemblPlantsGene:GSBRNA2T00146458001	Gene3D:3.40.50.150	GO:A0A078DJP7	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	InterPro:Methyltransf_11	InterPro:SAM-dependent_MTases
PANTHER:PTHR43591	PANTHER:PTHR43591:SF19	PFAM:PF08241	ProteinID:CDX87473	ProteinID:CDX87473.1	SUPFAM:SSF53335
UniParc:UPI0004EE503C	MapMan:35.1	:	:	:	:

Description

BnaA07g34000D

Coordinates

chrLK031850:+:773987..776452

Molecular Weight (calculated)

39545.1 Da

IEP (calculated)

8.829

GRAVY (calculated)

0.044

Length

356 amino acids

Sequence
(BLAST)

001: MPRTIVSGRL SPAALPIGLS VSRLLSVKYA AQRLPVSVLI SARVCSFAVE TKSSVDYVVE KEKKKILACP ICYNSLAALI SQPHESAEYP ASATHLQCKY
101: CKKSYSANET HLDLTVASGT KQYTEPLPLS IELYRNPLVS FLYERGWRQN FMWGGFPGPE KEFEMAKEHL KHVLGGNIID ASCGSGLFSR LFAKSEHFAM
201: VYALDYSENM LRQCYEFLKQ EANLIDKKIV VLARADIARL QGHGPARLPF LSGVVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGLFRF
301: VPFLKKLRQE VMRYSGSHMF LSERELEDLC ESCGLVGFTC VRNGLFIMLS ATKPTR

Best Arabidopsis Sequence Match ( AT1G78140.1 )
(BLAST)

001: MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS
101: GIQVQCNTCK RSYSGNETHL DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP VLGGNIIDAS CGSGMFSRLF
201: TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF
301: IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

Arabidopsis Description

Uncharacterized methyltransferase At1g78140, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LBV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.