CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03819
KRH16003
KRH54801
KRH56699

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78140.1	KRH03819	AT3G18570.1	21798944
AT1G78140.1	KRH16003	AT3G18570.1	21798944
AT1G78140.1	KRH54801	AT3G18570.1	21798944
AT1G78140.1	KRH56699	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62365	Soybean	plastid	94.79	56.82
VIT_18s0001g05440.t01	Wine grape	mitochondrion	81.52	49.14
CDY14625	Canola	plastid	76.78	47.79
Bra008348.1-P	Field mustard	plastid	75.83	46.92
CDY26853	Canola	plastid	75.83	46.92
AT1G78140.1	Thale cress	plastid	75.83	45.07
GSMUA_Achr4P01800_001	Banana	mitochondrion	73.46	43.66
Bra015626.1-P	Field mustard	plastid	71.56	43.39
CDX87473	Canola	golgi, mitochondrion, plastid	72.04	42.7
CDX88421	Canola	plastid	71.09	42.49
EES14971	Sorghum	plastid	64.93	38.92
TraesCS6A01G271200.2	Wheat	plastid	65.4	38.33
TraesCS6B01G298300.1	Wheat	plastid	65.4	38.33
TraesCS6D01G243900.1	Wheat	plastid	65.4	38.02
Os08t0411200-01	Rice	mitochondrion	62.56	36.87
HORVU2Hr1G078410.1	Barley	plastid	64.93	36.05
HORVU6Hr1G068670.1	Barley	plastid	65.4	34.94
KRH12868	Soybean	plastid	53.08	32.84
KRH37854	Soybean	plastid	51.66	31.96
Zm00001d032301_P008	Maize	plastid	30.81	27.54

Protein Annotations

EMBL:ACUP02003448	EnsemblPlants:KRH53082	EnsemblPlantsGene:GLYMA_06G104300	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:Methyltransf_11
InterPro:SAM-dependent_MTases	PANTHER:PTHR43591	PANTHER:PTHR43591:SF19	PFAM:PF08241	ProteinID:KRH53082	ProteinID:KRH53082.1
SUPFAM:SSF53335	UniParc:UPI00029544C1	UniProt:K7KUC4	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr6:+:8302879..8306538

Molecular Weight (calculated)

23454.4 Da

IEP (calculated)

7.372

GRAVY (calculated)

0.199

Length

211 amino acids

Sequence
(BLAST)

001: VPLISFLHER GWRQTFSVWG GFPGPEKEFE LMKGFLKPVL GGNIIDASCA SGLFSRLFAK SGLFSFVVAL DYSENMLQQC YEFIQKEENF PKENFILVRA
101: DISRLPFVSS SVDAVHAGAA LHCWPSPIAV AEISRVLRPG GVFVVTTYML DGPFSVIPFL STLRQNARQV SGSYIFLSER ELEDHCRACG LVGFKCIRNG
201: LFEMISATKP S

Best Arabidopsis Sequence Match ( AT1G78140.1 )
(BLAST)

001: MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS
101: GIQVQCNTCK RSYSGNETHL DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP VLGGNIIDAS CGSGMFSRLF
201: TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF
301: IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

Arabidopsis Description

Uncharacterized methyltransferase At1g78140, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LBV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.