Factsheet for VIT_18s0001g05440.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g04210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78140.1	VIT_17s0000g04210.t01	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53082	Soybean	cytosol, mitochondrion	49.14	81.52
KRH62365	Soybean	plastid	65.14	64.77
Bra008348.1-P	Field mustard	plastid	58.86	60.41
CDY14625	Canola	plastid	58.29	60.18
CDY26853	Canola	plastid	58.0	59.53
AT1G78140.1	Thale cress	plastid	58.0	57.18
GSMUA_Achr4P01800_001	Banana	mitochondrion	57.71	56.9
Bra015626.1-P	Field mustard	plastid	55.71	56.03
CDX87473	Canola	golgi, mitochondrion, plastid	55.43	54.49
CDX88421	Canola	plastid	54.57	54.11
EES14971	Sorghum	plastid	54.0	53.69
TraesCS6A01G271200.2	Wheat	plastid	54.29	52.78
TraesCS6B01G298300.1	Wheat	plastid	54.29	52.78
TraesCS6D01G243900.1	Wheat	plastid	54.29	52.34
Os08t0411200-01	Rice	mitochondrion	51.71	50.56
HORVU2Hr1G078410.1	Barley	plastid	53.14	48.95
Zm00001d032301_P008	Maize	plastid	32.0	47.46
HORVU6Hr1G068670.1	Barley	plastid	53.43	47.34
VIT_11s0118g00620.t01	Wine grape	plastid	45.43	46.36
VIT_11s0118g00610.t01	Wine grape	plastid	43.71	45.27

Protein Annotations

EntrezGene:100252381	wikigene:100252381	Gene3D:3.40.50.150	MapMan:35.1	ProteinID:CBI19149	ProteinID:CBI19149.3
UniProt:E0CRJ5	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009507
GO:GO:0009536	GO:GO:0010287	GO:GO:0016740	GO:GO:0032259	EntrezGene:LOC100252381	wikigene:LOC100252381
InterPro:Methyltransf_11	PFAM:PF08241	PANTHER:PTHR43591	PANTHER:PTHR43591:SF19	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
TIGR:TC58697	UniParc:UPI0001985421	ArrayExpress:VIT_18s0001g05440	EnsemblPlantsGene:VIT_18s0001g05440	EnsemblPlants:VIT_18s0001g05440.t01	unigene:Vvi.5497
RefSeq:XP_002285799	RefSeq:XP_002285799.1	:	:	:	:

Description

No Description!

Coordinates

chr18:-:4310333..4319306

Molecular Weight (calculated)

38079.1 Da

IEP (calculated)

7.851

GRAVY (calculated)

0.166

Length

350 amino acids

Sequence
(BLAST)

001: MARVIAKFPT VFVPGQLGQP RDPFFKPLFS PPTVNFVFAA KLRASSTPAA VVVETKPDPI SVEKEISIGK SILACPICYQ PFTWNGDLGL SVESMPGSSF
101: HCSSCKKACF GNETHLDLTV ATGAKEYDES MPAATEIFRT PLISFLYERG WRQNFIWGGF PGLEKEFELA KGYLKPVLGG TIVDASCGSG LFSRTFAKSG
201: LFSLVVALDF SENMLRQCYE FIKQEEGFPK ENILLVRADI SRLPFASSSV DAVHAGAALH CWPSPSIAVA EISRVLRPGG VFVATTYLLD GPFSVLPFLK
301: TLRQNMVRVA GSHAFLSERE LEDLCTACGL GGFTCVRNGR FVMISATKPS

Best Arabidopsis Sequence Match ( AT1G78140.1 )
(BLAST)

001: MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS
101: GIQVQCNTCK RSYSGNETHL DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP VLGGNIIDAS CGSGMFSRLF
201: TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF
301: IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

Arabidopsis Description

Uncharacterized methyltransferase At1g78140, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LBV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.