Factsheet for TraesCS6D01G243900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G415100.1
TraesCS1B01G445100.1
TraesCS1D01G422600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78140.1	TraesCS1A01G415100.1	AT3G18570.1	21798944
AT1G78140.1	TraesCS1B01G445100.1	AT3G18570.1	21798944
AT1G78140.1	TraesCS1D01G422600.1	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G298300.1	Wheat	plastid	94.21	95.0
TraesCS6A01G271200.2	Wheat	plastid	93.39	94.17
HORVU2Hr1G078410.1	Barley	plastid	90.36	86.32
HORVU6Hr1G068670.1	Barley	plastid	87.05	80.0
EES14971	Sorghum	plastid	68.87	71.02
Os08t0411200-01	Rice	mitochondrion	67.77	68.72
KRH53082	Soybean	cytosol, mitochondrion	38.02	65.4
Zm00001d032301_P008	Maize	plastid	38.29	58.9
GSMUA_Achr4P01800_001	Banana	mitochondrion	55.1	56.34
CDY26853	Canola	plastid	52.62	56.01
Bra008348.1-P	Field mustard	plastid	52.34	55.72
CDY14625	Canola	plastid	51.79	55.46
TraesCS7D01G502700.1	Wheat	cytosol, mitochondrion, nucleus	38.84	55.08
VIT_18s0001g05440.t01	Wine grape	mitochondrion	52.34	54.29
AT1G78140.1	Thale cress	plastid	52.07	53.24
Bra015626.1-P	Field mustard	plastid	49.86	52.01
CDX88421	Canola	plastid	50.41	51.84
CDX87473	Canola	golgi, mitochondrion, plastid	49.59	50.56
KRH62365	Soybean	plastid	48.76	50.28
TraesCS7D01G490800.1	Wheat	plastid	43.53	45.27
TraesCS7D01G398300.2	Wheat	plastid	44.35	44.97

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009507
GO:GO:0009536	GO:GO:0010287	GO:GO:0016740	InterPro:Methyltransf_11	PFAM:PF08241	PANTHER:PTHR43591
PANTHER:PTHR43591:SF19	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS6D01G243900	EnsemblPlants:TraesCS6D01G243900.1	TIGR:cd02440
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:346250524..346253747

Molecular Weight (calculated)

38920.7 Da

IEP (calculated)

6.143

GRAVY (calculated)

0.182

Length

363 amino acids

Sequence
(BLAST)

001: MAAIRSAAIS AAAVVAPRGF GRRRCLVACL AAPARGALGV TASASASASG KMLPRSALHA SASPASSTGA PDSDEAAAES LVEAELSKLA CPICYYPLVS
101: SIDHQSAPSK SDSSLECSTC KKLYSKDDYW DLTVAVGSTE YSETMPAATE LFRTQLVSFL YERGWRQNFI WGGFPGLEKE FEMAKDYLKP TSGGIIIDAS
201: CGSGLFSRLF VKSELYCLVV ALDFSENMLK QCKEFIKQEN ISDERLALVR ADISRLPFVS GSIDALHAGA AIHCWPSPAC AVAEISRVLR PGGIFVGSTF
301: IADVLPPVIP LLRIGRPYID QITGNNTFLS ELELEDLCRA CGLVNFTFVR NGFYIMFSAT KAS

Best Arabidopsis Sequence Match ( AT1G78140.1 )
(BLAST)

001: MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS
101: GIQVQCNTCK RSYSGNETHL DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP VLGGNIIDAS CGSGMFSRLF
201: TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF
301: IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

Arabidopsis Description

Uncharacterized methyltransferase At1g78140, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LBV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.