Factsheet for GSMUA_Achr4P01800_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P11880_001
GSMUA_Achr3P26330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78140.1	GSMUA_Achr1P11880_001	AT3G18570.1	21798944
AT1G78140.1	GSMUA_Achr3P26330_001	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53082	Soybean	cytosol, mitochondrion	43.66	73.46
CDY14625	Canola	plastid	56.06	58.7
CDY26853	Canola	plastid	56.06	58.36
Bra008348.1-P	Field mustard	plastid	55.77	58.06
VIT_18s0001g05440.t01	Wine grape	mitochondrion	56.9	57.71
KRH62365	Soybean	plastid	57.18	57.67
AT1G78140.1	Thale cress	plastid	57.18	57.18
TraesCS6B01G298300.1	Wheat	plastid	57.46	56.67
TraesCS6A01G271200.2	Wheat	plastid	56.9	56.11
TraesCS6D01G243900.1	Wheat	plastid	56.34	55.1
EES14971	Sorghum	plastid	54.08	54.55
Bra015626.1-P	Field mustard	plastid	53.24	54.31
CDX88421	Canola	plastid	53.8	54.11
CDX87473	Canola	golgi, mitochondrion, plastid	53.52	53.37
HORVU2Hr1G078410.1	Barley	plastid	55.49	51.84
HORVU6Hr1G068670.1	Barley	plastid	56.34	50.63
Os08t0411200-01	Rice	mitochondrion	50.7	50.28
Zm00001d032301_P008	Maize	plastid	32.11	48.31
GSMUA_Achr2P05170_001	Banana	plastid	46.76	47.03

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009507
GO:GO:0009536	GO:GO:0010287	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSMUA_Achr4G01800_001	EnsemblPlants:GSMUA_Achr4P01800_001
EnsemblPlants:GSMUA_Achr4T01800_001	UniProt:M0SK97	InterPro:Methyltransf_11	PFAM:PF08241	PANTHER:PTHR43591	PANTHER:PTHR43591:SF19
InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0002967FF7	SEG:seg	:	:

Description

methyltransferase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G01800_001]

Coordinates

chr4:+:1512234..1517794

Molecular Weight (calculated)

38499.5 Da

IEP (calculated)

8.087

GRAVY (calculated)

0.100

Length

355 amino acids

Sequence
(BLAST)

001: MTTALGNVGG VLLHLPLRHF LFNPRRSLIP KPHLLARGVV IRAATTSSSS PPGTATGDSN PVTQDLTEDA KVSTGIPILA CPICYNSLIS KNGPGLKLAF
101: QSASNLECHT CKKDYQNNGI YLDLAVASGS KDYAETMPAM TELFRSPLVS FLYERGWRQN FVWGGFPGPE REFEMAKGYL KPSTGGTIID ASCGSGLFSR
201: LFAKSGMFSL VIALDFSENM LQQCYNFINQ EGMPRENLIL VRADISRLPF VSSSVDAVHA GAAIHCWPSP SAGVAEISRV LRPGGVFVAT TFILDVLPPV
301: IPILKTVRQY YIRASSNYLY LSEGELEDLC QTCGLVNFTC VRNGPFVMIS ATKPS

Best Arabidopsis Sequence Match ( AT1G78140.1 )
(BLAST)

001: MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS
101: GIQVQCNTCK RSYSGNETHL DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP VLGGNIIDAS CGSGMFSRLF
201: TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF
301: IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

Arabidopsis Description

Uncharacterized methyltransferase At1g78140, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LBV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.