CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75969
CDX82338
CDX92248
CDX95515
CDX99345
CDY06745
CDY18527

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78140.1	CDX75969	AT3G18570.1	21798944
AT1G78140.1	CDX82338	AT3G18570.1	21798944
AT1G78140.1	CDX92248	AT3G18570.1	21798944
AT1G78140.1	CDX95515	AT3G18570.1	21798944
AT1G78140.1	CDX99345	AT3G18570.1	21798944
AT1G78140.1	CDY06745	AT3G18570.1	21798944
AT1G78140.1	CDY18527	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87473	Canola	golgi, mitochondrion, plastid	91.78	91.01
CDY14625	Canola	plastid	72.24	75.22
CDY26853	Canola	plastid	71.67	74.19
KRH53082	Soybean	cytosol, mitochondrion	42.49	71.09
AT1G78140.1	Thale cress	plastid	71.1	70.7
VIT_18s0001g05440.t01	Wine grape	mitochondrion	54.11	54.57
KRH62365	Soybean	plastid	54.39	54.55
GSMUA_Achr4P01800_001	Banana	mitochondrion	54.11	53.8
TraesCS6B01G298300.1	Wheat	plastid	52.97	51.94
TraesCS6A01G271200.2	Wheat	plastid	52.41	51.39
Os08t0411200-01	Rice	mitochondrion	51.27	50.56
TraesCS6D01G243900.1	Wheat	plastid	51.84	50.41
EES14971	Sorghum	plastid	49.01	49.15
HORVU2Hr1G078410.1	Barley	plastid	51.27	47.63
HORVU6Hr1G068670.1	Barley	plastid	50.99	45.57
Zm00001d032301_P008	Maize	plastid	28.33	42.37
CDY57579	Canola	plastid	41.36	41.36
CDY06948	Canola	nucleus	41.36	18.25

Protein Annotations

EnsemblPlants:CDX88421	EnsemblPlantsGene:GSBRNA2T00147961001	Gene3D:3.40.50.150	GO:A0A078DGL7	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	InterPro:Methyltransf_11	InterPro:SAM-dependent_MTases
PANTHER:PTHR43591	PANTHER:PTHR43591:SF19	PFAM:PF08241	ProteinID:CDX88421	ProteinID:CDX88421.1	SEG:seg
SUPFAM:SSF53335	UniParc:UPI0004EB9102	MapMan:35.1	:	:	:

Description

BnaC06g38650D

Coordinates

chrLK031855:-:923875..925924

Molecular Weight (calculated)

38906.1 Da

IEP (calculated)

7.914

GRAVY (calculated)

0.066

Length

353 amino acids

Sequence
(BLAST)

001: MPMTVVSSRL SPAILPTGLS FSRLLSVKYA AQRLPVSALI SARASSASVE TKSSVDYVVE KEKKNILACP ICYNSLAALI SQPHESAESP ASGTHLQCKT
101: CNKSYSANET HLDLTVASGT KQYTEPLPLS IELYRNPLVS FLYERGWRQN FMWGGFPGPE KEFEMAKEYL KHVLGGNIID ASCGSGIFSR LFAKSEHFAM
201: VYALDYSENM LRQCYEFLKQ EANLIDKKIV VLARADIARL PFLSGSVDAV HAGAALHCWP SPSSAVAEIS RVLRPGGVFV ATTFIYDGLV RFVPFLKELR
301: QEVMGYSGSH MFLSERELED LCKSCGLVGF TCVRNGLFIM LSATKPTDML THL

Best Arabidopsis Sequence Match ( AT1G78140.1 )
(BLAST)

001: MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS
101: GIQVQCNTCK RSYSGNETHL DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP VLGGNIIDAS CGSGMFSRLF
201: TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF
301: IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

Arabidopsis Description

Uncharacterized methyltransferase At1g78140, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LBV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.