CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75969
CDX82338
CDX92248
CDX95515
CDX99345
CDY06745
CDY18527

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78140.1	CDX75969	AT3G18570.1	21798944
AT1G78140.1	CDX82338	AT3G18570.1	21798944
AT1G78140.1	CDX92248	AT3G18570.1	21798944
AT1G78140.1	CDX95515	AT3G18570.1	21798944
AT1G78140.1	CDX99345	AT3G18570.1	21798944
AT1G78140.1	CDY06745	AT3G18570.1	21798944
AT1G78140.1	CDY18527	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26853	Canola	plastid	96.17	95.6
AT1G78140.1	Thale cress	plastid	83.78	80.0
KRH53082	Soybean	cytosol, mitochondrion	47.79	76.78
CDX88421	Canola	plastid	75.22	72.24
CDX87473	Canola	golgi, mitochondrion, plastid	75.22	71.63
VIT_18s0001g05440.t01	Wine grape	mitochondrion	60.18	58.29
KRH62365	Soybean	plastid	59.59	57.39
GSMUA_Achr4P01800_001	Banana	mitochondrion	58.7	56.06
TraesCS6A01G271200.2	Wheat	plastid	55.75	52.5
TraesCS6B01G298300.1	Wheat	plastid	55.75	52.5
TraesCS6D01G243900.1	Wheat	plastid	55.46	51.79
EES14971	Sorghum	plastid	53.39	51.42
Os08t0411200-01	Rice	mitochondrion	54.28	51.4
HORVU2Hr1G078410.1	Barley	plastid	54.87	48.95
HORVU6Hr1G068670.1	Barley	plastid	54.28	46.58
Zm00001d032301_P008	Maize	plastid	31.27	44.92
CDY57579	Canola	plastid	42.77	41.08
CDY06948	Canola	nucleus	42.77	18.12

Protein Annotations

EnsemblPlants:CDY14625	EnsemblPlantsGene:GSBRNA2T00084371001	Gene3D:3.40.50.150	GO:A0A078FJM9	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:Methyltransf_11
InterPro:SAM-dependent_MTases	PANTHER:PTHR43591	PANTHER:PTHR43591:SF19	PFAM:PF08241	ProteinID:CDY14625	ProteinID:CDY14625.1
SUPFAM:SSF53335	UniParc:UPI0004EF034C	UniProt:A0A078FJM9	MapMan:35.1	:	:

Description

BnaC02g24880DBnaC02g24880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJM9]

Coordinates

chrLK032045:+:422108..423963

Molecular Weight (calculated)

37304.9 Da

IEP (calculated)

7.975

GRAVY (calculated)

0.031

Length

339 amino acids

Sequence
(BLAST)

001: MPMTVVPGRF TPAILSIGYR LPSFKYAARR VAVFVPRSAA SISVETNSSV DSVVEKEKDI LACPICYNSL ALISQPNGLV GSAGTQLQCN TCKGSYSGNE
101: THLDLAVASG SNQYTEPMPL STELFRTPLV SFLYERGWRQ NFIWGGFPGP EKEFEMAREY LKPVLGGNII DASCGSGMFS RLFAKSELFS RVIALDYSEN
201: MLKQCYEFLN QEENLTNKEN VVLVRADIAR LPFLSGSVDA VHAGAALHCW PSPSSAVAEI SRVLRPGGVF VATTFIYDGP FSFIPFLKNL RQELMRYSGS
301: HIFLSERELE DLCKAGGLVG FTRVRNGLFI MLSATKPSR

Best Arabidopsis Sequence Match ( AT1G78140.1 )
(BLAST)

001: MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS
101: GIQVQCNTCK RSYSGNETHL DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP VLGGNIIDAS CGSGMFSRLF
201: TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF
301: IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

Arabidopsis Description

Uncharacterized methyltransferase At1g78140, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LBV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.