CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03819
KRH16003
KRH54801
KRH56699

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78140.1	KRH03819	AT3G18570.1	21798944
AT1G78140.1	KRH16003	AT3G18570.1	21798944
AT1G78140.1	KRH54801	AT3G18570.1	21798944
AT1G78140.1	KRH56699	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53082	Soybean	cytosol, mitochondrion	56.82	94.79
VIT_18s0001g05440.t01	Wine grape	mitochondrion	64.77	65.14
CDY14625	Canola	plastid	57.39	59.59
CDY26853	Canola	plastid	57.39	59.24
Bra008348.1-P	Field mustard	plastid	57.1	58.94
GSMUA_Achr4P01800_001	Banana	mitochondrion	57.67	57.18
AT1G78140.1	Thale cress	plastid	57.1	56.62
Bra015626.1-P	Field mustard	plastid	53.98	54.6
CDX88421	Canola	plastid	54.55	54.39
CDX87473	Canola	golgi, mitochondrion, plastid	54.26	53.65
EES14971	Sorghum	plastid	51.14	51.14
TraesCS6B01G298300.1	Wheat	plastid	50.85	49.72
TraesCS6A01G271200.2	Wheat	plastid	50.57	49.44
TraesCS6D01G243900.1	Wheat	plastid	50.28	48.76
Os08t0411200-01	Rice	mitochondrion	46.88	46.09
HORVU2Hr1G078410.1	Barley	plastid	49.72	46.05
HORVU6Hr1G068670.1	Barley	plastid	50.85	45.32
KRH12868	Soybean	plastid	42.05	43.4
Zm00001d032301_P008	Maize	plastid	28.98	43.22
KRH37854	Soybean	plastid	41.48	42.82

Protein Annotations

EMBL:ACUP02002235	EnsemblPlants:KRH62365	EnsemblPlantsGene:GLYMA_04G103100	EntrezGene:100819297	Gene3D:3.40.50.150	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259
InterPro:Methyltransf_11	InterPro:SAM-dependent_MTases	PANTHER:PTHR43591	PANTHER:PTHR43591:SF19	PFAM:PF08241	ProteinID:KRH62365
ProteinID:KRH62365.1	SUPFAM:SSF53335	UniParc:UPI000233996A	UniProt:I1JVF7	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr4:+:9554862..9558678

Molecular Weight (calculated)

38516.1 Da

IEP (calculated)

7.262

GRAVY (calculated)

0.115

Length

352 amino acids

Sequence
(BLAST)

001: MAIGVAVSGM YTLTPTLSSF KHPTRLFSRA AFTAKLPLQF RASSTSFIDT ETNPRESNVV VVEKDVSSRS SNSLACPVCY DSLTWNGDPG FSVDTITGSS
101: FQCSTCQKTY IGNQTHLDLT ATGGAKSYGE SMPASTELFR VPLISFLYER GWRQTFSVWG GFPGPEKEFE LMKGFLKPIL GGNIIDASCA SGLFSRLFAK
201: SGLFSFIVAL DYSENMLQQC YEFIQQEENF PKENFILVRA DISRLPFVSS SVDAVHAGAA LHCWPSPLAA VAEISRVLRP GGVFVATTYI LDGPFSVIPF
301: LSSLRQNVRQ VSGSYIFLSE RELEDLCRAC GLVGFKCIRN GLFVMISATK PS

Best Arabidopsis Sequence Match ( AT1G78140.1 )
(BLAST)

001: MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS
101: GIQVQCNTCK RSYSGNETHL DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP VLGGNIIDAS CGSGMFSRLF
201: TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF
301: IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

Arabidopsis Description

Uncharacterized methyltransferase At1g78140, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LBV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.