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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • plastid 3
  • vacuole 2
  • mitochondrion 1
  • golgi 3
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:golgi
Plant-mPloc:golgi, plasma membrane
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
 endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH56699 Soybean endoplasmic reticulum 92.95 88.96
KRH16003 Soybean golgi, plasma membrane, vacuole 63.46 67.81
VIT_17s0000g04210.t01 Wine grape plastid 66.67 64.6
Solyc03g119820.1.1 Tomato plastid 67.95 64.24
PGSC0003DMT400014323 Potato plastid 68.59 63.69
EES19991 Sorghum golgi, mitochondrion, peroxisome, plastid 60.9 56.89
GSMUA_Achr3P26330_001 Banana plastid 58.33 54.82
Zm00001d009648_P001 Maize plasma membrane 55.13 54.78
Os05t0576700-01 Rice plastid 58.97 53.18
CDX92248 Canola golgi, plasma membrane, plastid, vacuole 55.13 52.12
Bra022333.1-P Field mustard golgi, plasma membrane, plastid, vacuole 55.13 52.12
GSMUA_Achr1P11880_001 Banana plastid 55.77 51.79
Bra018770.1-P Field mustard plastid 53.21 51.55
CDX99345 Canola golgi, plasma membrane, plastid, vacuole 54.49 51.52
AT3G18570.1 Thale cress golgi, peroxisome, plasma membrane, plastid 54.49 51.2
TraesCS1D01G422600.1 Wheat plasma membrane 54.49 50.9
Bra014166.1-P Field mustard plastid 53.85 50.6
TraesCS1B01G445100.1 Wheat plasma membrane 53.85 50.3
TraesCS1A01G415100.1 Wheat plasma membrane 53.85 50.3
HORVU1Hr1G091010.1 Barley cytosol, golgi, plasma membrane 53.85 50.0
AT1G48990.1 Thale cress plastid 53.85 49.7
CDX75969 Canola cytosol, golgi, plasma membrane, plastid 51.92 49.09
CDX82338 Canola golgi, plasma membrane, vacuole 51.28 48.48
PGSC0003DMT400010423 Potato golgi, mitochondrion, plasma membrane, plastid 45.51 47.65
CDY06745 Canola plasma membrane 50.0 47.56
CDX95515 Canola plasma membrane 50.0 47.56
KRH54801 Soybean plasma membrane 56.41 46.07
CDY18527 Canola golgi, plasma membrane, plastid 48.08 45.73
Bra037577.1-P Field mustard golgi, plasma membrane, plastid 48.08 45.73
Bra001711.1-P Field mustard golgi, plasma membrane, vacuole 51.28 45.45
CDX77269 Canola endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane, plastid 40.38 45.0
Solyc06g069260.1.1 Tomato plasma membrane, plastid 43.59 44.44
Os01t0643900-01 Rice golgi, nucleus, plasma membrane 39.74 36.9
KRH61966 Soybean endoplasmic reticulum, nucleus 37.82 35.12
Zm00001d044080_P001 Maize plastid 40.38 33.69
OQU87227 Sorghum plastid 41.03 33.16
KRH34604 Soybean endoplasmic reticulum 28.85 30.61
KRG92187 Soybean nucleus 28.85 30.61
KRH52626 Soybean endoplasmic reticulum 38.46 28.3
HORVU3Hr1G057690.1 Barley plasma membrane 27.56 27.74
KRH03243 Soybean golgi, plasma membrane, plastid, vacuole 24.36 23.75
KRG94116 Soybean nucleus 27.56 19.03
KRH07172 Soybean endoplasmic reticulum, nucleus 26.92 18.83
KRH56554 Soybean endoplasmic reticulum, nucleus 23.08 18.18
KRG93234 Soybean nucleus 21.79 17.99
Protein Annotations
EntrezGene:100794728MapMan:5.9.2EMBL:ACUP02010363EnsemblPlantsGene:GLYMA_17G122000GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0012511GO:GO:0016020GO:GO:0016021
GO:GO:0019915UniProt:I1MUH0EnsemblPlants:KRH03819ProteinID:KRH03819ProteinID:KRH03819.1InterPro:Oleosin
PFAM:PF01277PANTHER:PTHR33203PANTHER:PTHR33203:SF4TMHMM:TMhelixUniParc:UPI000233E4F6SEG:seg
Description
hypothetical protein
Coordinates
chr17:-:9771675..9772612
Molecular Weight (calculated)
16726.5 Da
IEP (calculated)
9.412
GRAVY (calculated)
0.549
Length
156 amino acids
Sequence
(BLAST)
001: MADAHRTTAP PPSLSAAFLR KLQDRGPNST QLACILTLLL TASVLLLLTG LTVAGAVLGL IFFLPLIIVS SPVWVPAGTF LFIVTAAFLS VCGFGVALVA
101: VLSWMYHYFR GLHPPGSDRV DYARSRIYDT ASHVKDYARE YGGYLQSKVK DAAPGA
Best Arabidopsis Sequence Match ( AT3G18570.1 )
(BLAST)
001: MAERFSSGEA QYWPNYGSTA TTTVSNSPIS SFFHQLRSHS PTSSQLFGFL ALFISTGILL FLLGVSVTAA VLGFIVFLPL IIISSPIWIP VFVVVGGFLT
101: VSGFLVGTVA LVSWTYRYFR GMHPVGSNQM DYARSRIYDT ASHVKDYARE YGGYFHGRAK DAAPGA
Arabidopsis Description
Oleosin family protein [Source:UniProtKB/TrEMBL;Acc:Q9LII2]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.