CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 2
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61966	Soybean	endoplasmic reticulum, nucleus	72.64	91.67
VIT_04s0008g00540.t01	Wine grape	plasma membrane	43.4	63.01
Bra034280.1-P	Field mustard	plasma membrane	37.74	54.79
CDY35326	Canola	plasma membrane	37.74	54.79
CDX77021	Canola	plasma membrane	36.79	53.79
PGSC0003DMT400065474	Potato	golgi, plasma membrane, vacuole	31.13	47.14
AT2G25890.2	Thale cress	mitochondrion	38.68	47.13
KRG92187	Soybean	nucleus	30.19	43.54
KRH34604	Soybean	endoplasmic reticulum	30.19	43.54
Solyc08g066040.1.1	Tomato	golgi, plasma membrane, plastid	28.3	42.86
KRH03819	Soybean	endoplasmic reticulum, nucleus	28.3	38.46
KRH56699	Soybean	endoplasmic reticulum	28.3	36.81
KRH16003	Soybean	golgi, plasma membrane, vacuole	24.06	34.93
KRH54801	Soybean	plasma membrane	26.42	29.32
KRH03243	Soybean	golgi, plasma membrane, plastid, vacuole	19.81	26.25
KRG93234	Soybean	nucleus	21.23	23.81
KRH56554	Soybean	endoplasmic reticulum, nucleus	21.23	22.73
KRG94116	Soybean	nucleus	24.06	22.57
KRH07172	Soybean	endoplasmic reticulum, nucleus	23.58	22.42

Protein Annotations

MapMan:5.9.2	EMBL:ACUP02003425	EnsemblPlantsGene:GLYMA_06G078700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005811	GO:GO:0008150	GO:GO:0012511	GO:GO:0016020	GO:GO:0016021
GO:GO:0019915	UniProt:K7KTR9	EnsemblPlants:KRH52626	ProteinID:KRH52626	ProteinID:KRH52626.1	InterPro:Oleosin
PFAM:PF01277	ScanProsite:PS00811	PANTHER:PTHR33203	PANTHER:PTHR33203:SF3	TMHMM:TMhelix	UniParc:UPI000296107D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:6080839..6082716

Molecular Weight (calculated)

22598.9 Da

IEP (calculated)

8.902

GRAVY (calculated)

0.109

Length

212 amino acids

Sequence
(BLAST)

001: MQSRHDMQST LTSCRVTSHT SSYTTIYLSH SILSSTLGLA REKIPTMATI STDQPRGSYS YGTSYGAPYG TTYETNSSIN NPPSRQTVKF ITAATIGITL
101: LLLSGLTLTG TVIGLIIATP LLVIFSPILV PAAFVLFLVA SGFLFSGGCG VAAIAALSWI YNYVSGNQPA GSDTLDYAKG YLTDKARDVK ERAKDYGSYA
201: QGRINEATQG TY

Best Arabidopsis Sequence Match ( AT2G25890.2 )
(BLAST)

001: MVSLLKLQKQ HRTLNPYSLR KRKKEMADHQ QHQQQQQPIM RSLHESSPST RQIVRFVTAA TIGLSLLVLS GLTLTGTVIG LIVATPLMVL FSPVLVPAVI
101: TIGLLTMGFL FSGGCGVAAA TALTWIYKYV TGKHPMGADK VDYARMRIAE KAKELGHYTH SQPQQTHQTT TTTH

Arabidopsis Description

Oleosin [Source:UniProtKB/TrEMBL;Acc:O82308]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.