CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 2
endoplasmic reticulum 2
plasma membrane 2
extracellular 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56554	Soybean	endoplasmic reticulum, nucleus	70.37	67.17
Solyc12g010920.1.1	Tomato	cytosol, golgi, plasma membrane	39.68	43.6
VIT_14s0066g00700.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	31.75	42.86
PGSC0003DMT400032872	Potato	cytosol, golgi, plastid	37.57	42.77
VIT_14s0066g00710.t01	Wine grape	golgi, plasma membrane, plastid	34.92	42.04
Solyc02g086490.2.1	Tomato	extracellular	32.28	40.94
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	32.28	40.94
AT3G01570.1	Thale cress	plasma membrane	39.15	40.44
Os03t0699000-01	Rice	plastid	36.51	40.12
Bra039071.1-P	Field mustard	golgi, peroxisome, plasma membrane	38.1	38.3
CDY20040	Canola	cytosol	38.1	38.3
AT3G27660.1	Thale cress	cytosol, golgi, plasma membrane	38.1	37.7
AT5G40420.1	Thale cress	cytosol	39.68	37.69
Zm00001d033612_P001	Maize	cytosol, golgi, plasma membrane	34.92	37.5
KRG94116	Soybean	nucleus	44.44	37.17
Zm00001d013494_P001	Maize	cytosol	36.51	37.1
KRH07172	Soybean	endoplasmic reticulum, nucleus	42.86	36.32
Bra033021.1-P	Field mustard	golgi, peroxisome, plasma membrane	35.45	35.64
CDY49771	Canola	cytosol	35.45	35.64
CDY03988	Canola	cytosol, endoplasmic reticulum, golgi	35.45	35.08
CDX67456	Canola	cytosol	37.04	35.0
CDY11685	Canola	cytosol	37.04	35.0
Bra028458.1-P	Field mustard	golgi, nucleus, peroxisome	37.57	33.65
Bra025577.1-P	Field mustard	cytosol, golgi, nucleus	37.57	32.27
GSMUA_Achr4P13900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	32.28	32.11
CDY50118	Canola	cytosol	36.51	30.13
KRH03243	Soybean	golgi, plasma membrane, plastid, vacuole	24.34	28.75
HORVU4Hr1G005800.1	Barley	plastid	35.98	28.45
KRH61966	Soybean	endoplasmic reticulum, nucleus	24.87	27.98
KXG37789	Sorghum	plastid	34.92	25.58
KRH34604	Soybean	endoplasmic reticulum	17.99	23.13
KRG92187	Soybean	nucleus	17.46	22.45
KRH03819	Soybean	endoplasmic reticulum, nucleus	17.99	21.79
KRH52626	Soybean	endoplasmic reticulum	23.81	21.23
KRH56699	Soybean	endoplasmic reticulum	16.93	19.63
KRH16003	Soybean	golgi, plasma membrane, vacuole	13.76	17.81
KRH54801	Soybean	plasma membrane	17.99	17.8

Protein Annotations

EntrezGene:100794783	MapMan:5.9.2	EMBL:ACUP02011545	EnsemblPlantsGene:GLYMA_19G004800	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005811	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0010344	GO:GO:0012511	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	GO:GO:0050826	UniProt:I1N5I8	EnsemblPlants:KRG93234	ProteinID:KRG93234
ProteinID:KRG93234.1	InterPro:Oleosin	PFAM:PF01277	ScanProsite:PS00811	PANTHER:PTHR33203	PANTHER:PTHR33203:SF6
TMHMM:TMhelix	UniParc:UPI000233EE9F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:434515..435520

Molecular Weight (calculated)

19958.6 Da

IEP (calculated)

9.572

GRAVY (calculated)

0.258

Length

189 amino acids

Sequence
(BLAST)

001: MAEVRSQQPQ HVQVHASTTH TPQQYRYYQG GAKTQHHGGE GGGVMSLFPE ISLTGSQLLA LLAGVPLGGM LLLLSGVSLI ASLVGLAVAT PLFIFFSPVL
101: VPAAFVIGMA VTAVLAAGAC GLVGLVSFSW LVNCLRQMPR GTTTKTTMMR PEQAKRHVAD MEEYVGKKTK DVGQDIQTRA HAQGTTGMV

Best Arabidopsis Sequence Match ( AT3G01570.1 )
(BLAST)

001: MADVRTHSHQ LQVHPQRQHE GGIKVLYPQS GPSSTQVLAV FVGVPIGGTL LTIAGLTLAG SVIGLMLAFP LFLIFSPVIV PAAFVIGLAM TGFLASGAIG
101: LTGLSSMSWV LNYIRRAGQH IPEELEEAKH RLADMAEYVG QRTKDAGQTI EDKAHDVREA KTFDVRDRDT TKGTHNVRDT KTT

Arabidopsis Description

Oleosin 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.