CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
plastid 2
vacuole 2
mitochondrion 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52626	Soybean	endoplasmic reticulum	91.67	72.64
VIT_04s0008g00540.t01	Wine grape	plasma membrane	53.57	61.64
Bra034280.1-P	Field mustard	plasma membrane	47.02	54.11
CDY35326	Canola	plasma membrane	47.02	54.11
CDX77021	Canola	plasma membrane	45.83	53.1
PGSC0003DMT400065474	Potato	golgi, plasma membrane, vacuole	39.88	47.86
AT2G25890.2	Thale cress	mitochondrion	45.83	44.25
KRG92187	Soybean	nucleus	38.1	43.54
KRH34604	Soybean	endoplasmic reticulum	38.1	43.54
Solyc08g066040.1.1	Tomato	golgi, plasma membrane, plastid	35.71	42.86
KRH03819	Soybean	endoplasmic reticulum, nucleus	35.12	37.82
KRH56699	Soybean	endoplasmic reticulum	35.12	36.2
KRH16003	Soybean	golgi, plasma membrane, vacuole	29.76	34.25
KRH03243	Soybean	golgi, plasma membrane, plastid, vacuole	26.19	27.5
KRH54801	Soybean	plasma membrane	29.17	25.65
KRG93234	Soybean	nucleus	27.98	24.87
KRH56554	Soybean	endoplasmic reticulum, nucleus	27.38	23.23
KRG94116	Soybean	nucleus	30.95	23.01
KRH07172	Soybean	endoplasmic reticulum, nucleus	30.36	22.87

Protein Annotations

EntrezGene:100301903	MapMan:5.9.2	EMBL:ACUP02002203	EnsemblPlantsGene:GLYMA_04G077600	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005811	GO:GO:0008150	GO:GO:0012511	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	UniProt:I1JUP4	EnsemblPlants:KRH61966	ProteinID:KRH61966	ProteinID:KRH61966.1
InterPro:Oleosin	PFAM:PF01277	ScanProsite:PS00811	PANTHER:PTHR33203	PANTHER:PTHR33203:SF3	TMHMM:TMhelix
UniParc:UPI00023C070E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6509476..6510519

Molecular Weight (calculated)

17812.4 Da

IEP (calculated)

9.205

GRAVY (calculated)

0.256

Length

168 amino acids

Sequence
(BLAST)

001: MATISDQPRG SYSYGTSYGA PYGTTYETNT SINNPPSRQT VKFITAATIG ITLLLLSGLT LTGTVIGLII ATPLLVIFSP ILVPAAFVLF LVASGFLFSG
101: GCGVAAIAAL SWIYNYVSGN QPAGYDTLDY AKGYLADKAR DVKERAKDYG SYAQGREGSR FVCKVAKH

Best Arabidopsis Sequence Match ( AT2G25890.2 )
(BLAST)

001: MVSLLKLQKQ HRTLNPYSLR KRKKEMADHQ QHQQQQQPIM RSLHESSPST RQIVRFVTAA TIGLSLLVLS GLTLTGTVIG LIVATPLMVL FSPVLVPAVI
101: TIGLLTMGFL FSGGCGVAAA TALTWIYKYV TGKHPMGADK VDYARMRIAE KAKELGHYTH SQPQQTHQTT TTTH

Arabidopsis Description

Oleosin [Source:UniProtKB/TrEMBL;Acc:O82308]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.