CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid, vacuole

Predictor Summary:

nucleus 2
plastid 1
vacuole 3
mitochondrion 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34604	Soybean	endoplasmic reticulum	32.5	35.37
KRG92187	Soybean	nucleus	30.62	33.33
KRH61966	Soybean	endoplasmic reticulum, nucleus	27.5	26.19
KRH03819	Soybean	endoplasmic reticulum, nucleus	23.75	24.36
KRG93234	Soybean	nucleus	28.75	24.34
KRH07172	Soybean	endoplasmic reticulum, nucleus	33.75	24.22
KRG94116	Soybean	nucleus	33.12	23.45
KRH56699	Soybean	endoplasmic reticulum	22.5	22.09
KRH56554	Soybean	endoplasmic reticulum, nucleus	25.62	20.71
KRH52626	Soybean	endoplasmic reticulum	26.25	19.81
KRH16003	Soybean	golgi, plasma membrane, vacuole	17.5	19.18
KRH54801	Soybean	plasma membrane	20.62	17.28

Protein Annotations

EntrezGene:100776469	MapMan:5.9.2	EMBL:ACUP02010340	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G086400	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0010344	GO:GO:0012511	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	GO:GO:0050826	UniProt:I1MTE2	EnsemblPlants:KRH03243	ProteinID:KRH03243
ProteinID:KRH03243.1	InterPro:Oleosin	PFAM:PF01277	PANTHER:PTHR33203	PANTHER:PTHR33203:SF6	TMHMM:TMhelix
UniParc:UPI0001BA850F	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:6670952..6672249

Molecular Weight (calculated)

17305.8 Da

IEP (calculated)

10.150

GRAVY (calculated)

0.053

Length

160 amino acids

Sequence
(BLAST)

001: MADPQQQDNY MKRKPSNSNV LVLAALVPFG VSLLILVGLT LSATVISLTV VTPLFVIFSP VLLPAALFIA LAVAGFLTSG VFGITSISSF AWLATNLRRS
101: HSPEHPQRPR DDADRVAQKT DEAVRQAQET VHQAQKETAT KAQKDISETR KAHKESVATS

Best Arabidopsis Sequence Match ( AT3G01570.1 )
(BLAST)

001: MADVRTHSHQ LQVHPQRQHE GGIKVLYPQS GPSSTQVLAV FVGVPIGGTL LTIAGLTLAG SVIGLMLAFP LFLIFSPVIV PAAFVIGLAM TGFLASGAIG
101: LTGLSSMSWV LNYIRRAGQH IPEELEEAKH RLADMAEYVG QRTKDAGQTI EDKAHDVREA KTFDVRDRDT TKGTHNVRDT KTT

Arabidopsis Description

Oleosin 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.