Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 2
- plastid 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
endoplasmic reticulum:
27224218
nucleus: 27291164 nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH07172 | Soybean | endoplasmic reticulum, nucleus | 93.36 | 94.62 |
Solyc02g086490.2.1 | Tomato | extracellular | 38.05 | 57.72 |
Solyc12g010920.1.1 | Tomato | cytosol, golgi, plasma membrane | 43.36 | 56.98 |
PGSC0003DMT400032872 | Potato | cytosol, golgi, plastid | 40.71 | 55.42 |
VIT_14s0066g00710.t01 | Wine grape | golgi, plasma membrane, plastid | 35.84 | 51.59 |
VIT_14s0066g00700.t01 | Wine grape | golgi, plasma membrane, plastid, vacuole | 31.86 | 51.43 |
AT3G01570.1 | Thale cress | plasma membrane | 41.59 | 51.37 |
GSMUA_AchrUn_... | Banana | cytosol, golgi, plasma membrane | 33.63 | 51.01 |
CDY03988 | Canola | cytosol, endoplasmic reticulum, golgi | 38.5 | 45.55 |
AT3G27660.1 | Thale cress | cytosol, golgi, plasma membrane | 38.05 | 45.03 |
KRG93234 | Soybean | nucleus | 37.17 | 44.44 |
CDY49771 | Canola | cytosol | 36.73 | 44.15 |
Bra033021.1-P | Field mustard | golgi, peroxisome, plasma membrane | 36.73 | 44.15 |
AT5G40420.1 | Thale cress | cytosol | 38.5 | 43.72 |
CDY20040 | Canola | cytosol | 35.84 | 43.09 |
Bra039071.1-P | Field mustard | golgi, peroxisome, plasma membrane | 35.84 | 43.09 |
CDY11685 | Canola | cytosol | 36.73 | 41.5 |
Zm00001d033612_P001 | Maize | cytosol, golgi, plasma membrane | 32.3 | 41.48 |
CDX67456 | Canola | cytosol | 36.28 | 41.0 |
KRH56554 | Soybean | endoplasmic reticulum, nucleus | 34.96 | 39.9 |
Bra028458.1-P | Field mustard | golgi, nucleus, peroxisome | 37.17 | 39.81 |
Os03t0699000-01 | Rice | plastid | 29.65 | 38.95 |
Zm00001d013494_P001 | Maize | cytosol | 31.86 | 38.71 |
Bra025577.1-P | Field mustard | cytosol, golgi, nucleus | 36.28 | 37.27 |
GSMUA_Achr4P13900_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 30.53 | 36.32 |
KRH03243 | Soybean | golgi, plasma membrane, plastid, vacuole | 23.45 | 33.12 |
CDY50118 | Canola | cytosol | 33.19 | 32.75 |
KRG92187 | Soybean | nucleus | 20.35 | 31.29 |
KRH34604 | Soybean | endoplasmic reticulum | 20.35 | 31.29 |
KRH61966 | Soybean | endoplasmic reticulum, nucleus | 23.01 | 30.95 |
HORVU4Hr1G005800.1 | Barley | plastid | 31.86 | 30.13 |
KXG37789 | Sorghum | plastid | 31.86 | 27.91 |
KRH03819 | Soybean | endoplasmic reticulum, nucleus | 19.03 | 27.56 |
KRH56699 | Soybean | endoplasmic reticulum | 18.58 | 25.77 |
KRH52626 | Soybean | endoplasmic reticulum | 22.57 | 24.06 |
KRH16003 | Soybean | golgi, plasma membrane, vacuole | 14.16 | 21.92 |
KRH54801 | Soybean | plasma membrane | 16.81 | 19.9 |
Protein Annotations
MapMan:5.9.2 | EntrezGene:547918 | EMBL:ACUP02011729 | EnsemblPlantsGene:GLYMA_19G063400 | GO:GO:0000003 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005811 | GO:GO:0006950 | GO:GO:0007275 |
GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0010344 | GO:GO:0012511 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0019915 | GO:GO:0050826 | UniProt:I1N747 | EnsemblPlants:KRG94116 | ProteinID:KRG94116 |
ProteinID:KRG94116.1 | ProteinID:KRG94117.1 | InterPro:Oleosin | PFAM:PF01277 | ScanProsite:PS00811 | PANTHER:PTHR33203 |
PANTHER:PTHR33203:SF6 | TMHMM:TMhelix | UniParc:UPI000233F000 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr19:-:13707161..13715829
Molecular Weight (calculated)
23590.1 Da
IEP (calculated)
9.384
GRAVY (calculated)
0.025
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTQVPPHSV QVHTTTHRYE AGVVPPGARF EPPRYEAGVK APSIYHSERG PTTSQVLAVL AGLPVGGILL LLAGLTLAGT LTGLAVATPL FVLFSPVLVP
101: ATVAIGLAVA GFLTSGAFGL TALSSFSWIL NYIRETQPAS ENLAAAAKHH LAEAAEYVGQ KTKEVGQKTK EVGQDIQSKA QDTREAAARD AREAAARDAR
201: EAAARDAKVE ARDVKRTTVT ATTATA
101: ATVAIGLAVA GFLTSGAFGL TALSSFSWIL NYIRETQPAS ENLAAAAKHH LAEAAEYVGQ KTKEVGQKTK EVGQDIQSKA QDTREAAARD AREAAARDAR
201: EAAARDAKVE ARDVKRTTVT ATTATA
001: MADVRTHSHQ LQVHPQRQHE GGIKVLYPQS GPSSTQVLAV FVGVPIGGTL LTIAGLTLAG SVIGLMLAFP LFLIFSPVIV PAAFVIGLAM TGFLASGAIG
101: LTGLSSMSWV LNYIRRAGQH IPEELEEAKH RLADMAEYVG QRTKDAGQTI EDKAHDVREA KTFDVRDRDT TKGTHNVRDT KTT
101: LTGLSSMSWV LNYIRRAGQH IPEELEEAKH RLADMAEYVG QRTKDAGQTI EDKAHDVREA KTFDVRDRDT TKGTHNVRDT KTT
Arabidopsis Description
Oleosin 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS98]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.