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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • vacuole 2
  • plastid 2
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:vacuole
iPSORT:plastid
MultiLoc:golgi
Plant-mPloc:nucleus, plastid
PProwler:secretory
WoLF PSORT:mitochondrion
YLoc:cytosol
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH07172 Soybean endoplasmic reticulum, nucleus 93.36 94.62
Solyc02g086490.2.1 Tomato extracellular 38.05 57.72
Solyc12g010920.1.1 Tomato cytosol, golgi, plasma membrane 43.36 56.98
PGSC0003DMT400032872 Potato cytosol, golgi, plastid 40.71 55.42
VIT_14s0066g00710.t01 Wine grape golgi, plasma membrane, plastid 35.84 51.59
VIT_14s0066g00700.t01 Wine grape golgi, plasma membrane, plastid, vacuole 31.86 51.43
AT3G01570.1 Thale cress plasma membrane 41.59 51.37
GSMUA_AchrUn_... Banana cytosol, golgi, plasma membrane 33.63 51.01
CDY03988 Canola cytosol, endoplasmic reticulum, golgi 38.5 45.55
AT3G27660.1 Thale cress cytosol, golgi, plasma membrane 38.05 45.03
KRG93234 Soybean nucleus 37.17 44.44
CDY49771 Canola cytosol 36.73 44.15
Bra033021.1-P Field mustard golgi, peroxisome, plasma membrane 36.73 44.15
AT5G40420.1 Thale cress cytosol 38.5 43.72
CDY20040 Canola cytosol 35.84 43.09
Bra039071.1-P Field mustard golgi, peroxisome, plasma membrane 35.84 43.09
CDY11685 Canola cytosol 36.73 41.5
Zm00001d033612_P001 Maize cytosol, golgi, plasma membrane 32.3 41.48
CDX67456 Canola cytosol 36.28 41.0
KRH56554 Soybean endoplasmic reticulum, nucleus 34.96 39.9
Bra028458.1-P Field mustard golgi, nucleus, peroxisome 37.17 39.81
Os03t0699000-01 Rice plastid 29.65 38.95
Zm00001d013494_P001 Maize cytosol 31.86 38.71
Bra025577.1-P Field mustard cytosol, golgi, nucleus 36.28 37.27
GSMUA_Achr4P13900_001 Banana endoplasmic reticulum, mitochondrion, plasma membrane, plastid 30.53 36.32
KRH03243 Soybean golgi, plasma membrane, plastid, vacuole 23.45 33.12
CDY50118 Canola cytosol 33.19 32.75
KRG92187 Soybean nucleus 20.35 31.29
KRH34604 Soybean endoplasmic reticulum 20.35 31.29
KRH61966 Soybean endoplasmic reticulum, nucleus 23.01 30.95
HORVU4Hr1G005800.1 Barley plastid 31.86 30.13
KXG37789 Sorghum plastid 31.86 27.91
KRH03819 Soybean endoplasmic reticulum, nucleus 19.03 27.56
KRH56699 Soybean endoplasmic reticulum 18.58 25.77
KRH52626 Soybean endoplasmic reticulum 22.57 24.06
KRH16003 Soybean golgi, plasma membrane, vacuole 14.16 21.92
KRH54801 Soybean plasma membrane 16.81 19.9
Protein Annotations
MapMan:5.9.2EntrezGene:547918EMBL:ACUP02011729EnsemblPlantsGene:GLYMA_19G063400GO:GO:0000003GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005811GO:GO:0006950GO:GO:0007275
GO:GO:0008150GO:GO:0009628GO:GO:0009791GO:GO:0010344GO:GO:0012511GO:GO:0016020
GO:GO:0016021GO:GO:0019915GO:GO:0050826UniProt:I1N747EnsemblPlants:KRG94116ProteinID:KRG94116
ProteinID:KRG94116.1ProteinID:KRG94117.1InterPro:OleosinPFAM:PF01277ScanProsite:PS00811PANTHER:PTHR33203
PANTHER:PTHR33203:SF6TMHMM:TMhelixUniParc:UPI000233F000SEG:seg::
Description
hypothetical protein
Coordinates
chr19:-:13707161..13715829
Molecular Weight (calculated)
23590.1 Da
IEP (calculated)
9.384
GRAVY (calculated)
0.025
Length
226 amino acids
Sequence
(BLAST)
001: MTTQVPPHSV QVHTTTHRYE AGVVPPGARF EPPRYEAGVK APSIYHSERG PTTSQVLAVL AGLPVGGILL LLAGLTLAGT LTGLAVATPL FVLFSPVLVP
101: ATVAIGLAVA GFLTSGAFGL TALSSFSWIL NYIRETQPAS ENLAAAAKHH LAEAAEYVGQ KTKEVGQKTK EVGQDIQSKA QDTREAAARD AREAAARDAR
201: EAAARDAKVE ARDVKRTTVT ATTATA
Best Arabidopsis Sequence Match ( AT3G01570.1 )
(BLAST)
001: MADVRTHSHQ LQVHPQRQHE GGIKVLYPQS GPSSTQVLAV FVGVPIGGTL LTIAGLTLAG SVIGLMLAFP LFLIFSPVIV PAAFVIGLAM TGFLASGAIG
101: LTGLSSMSWV LNYIRRAGQH IPEELEEAKH RLADMAEYVG QRTKDAGQTI EDKAHDVREA KTFDVRDRDT TKGTHNVRDT KTT
Arabidopsis Description
Oleosin 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS98]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.