CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
vacuole 2
plastid 3
golgi 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94116	Soybean	nucleus	94.62	93.36
Solyc02g086490.2.1	Tomato	extracellular	37.22	55.7
Solyc12g010920.1.1	Tomato	cytosol, golgi, plasma membrane	42.6	55.23
PGSC0003DMT400032872	Potato	cytosol, golgi, plastid	40.36	54.22
AT3G01570.1	Thale cress	plasma membrane	42.15	51.37
VIT_14s0066g00710.t01	Wine grape	golgi, plasma membrane, plastid	34.98	49.68
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	33.18	49.66
VIT_14s0066g00700.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	30.49	48.57
CDY03988	Canola	cytosol, endoplasmic reticulum, golgi	37.67	43.98
AT3G27660.1	Thale cress	cytosol, golgi, plasma membrane	37.22	43.46
KRG93234	Soybean	nucleus	36.32	42.86
CDY49771	Canola	cytosol	35.87	42.55
Bra033021.1-P	Field mustard	golgi, peroxisome, plasma membrane	35.87	42.55
AT5G40420.1	Thale cress	cytosol	37.67	42.21
CDY20040	Canola	cytosol	34.98	41.49
Bra039071.1-P	Field mustard	golgi, peroxisome, plasma membrane	34.98	41.49
CDY11685	Canola	cytosol	35.87	40.0
CDX67456	Canola	cytosol	35.43	39.5
Zm00001d033612_P001	Maize	cytosol, golgi, plasma membrane	30.94	39.2
Bra028458.1-P	Field mustard	golgi, nucleus, peroxisome	36.32	38.39
KRH56554	Soybean	endoplasmic reticulum, nucleus	34.08	38.38
Os03t0699000-01	Rice	plastid	29.6	38.37
Zm00001d013494_P001	Maize	cytosol	31.39	37.63
Bra025577.1-P	Field mustard	cytosol, golgi, nucleus	35.43	35.91
GSMUA_Achr4P13900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	29.15	34.21
KRH03243	Soybean	golgi, plasma membrane, plastid, vacuole	24.22	33.75
CDY50118	Canola	cytosol	32.74	31.88
KRH34604	Soybean	endoplasmic reticulum	20.18	30.61
KRG92187	Soybean	nucleus	20.18	30.61
KRH61966	Soybean	endoplasmic reticulum, nucleus	22.87	30.36
HORVU4Hr1G005800.1	Barley	plastid	30.49	28.45
KRH03819	Soybean	endoplasmic reticulum, nucleus	18.83	26.92
KXG37789	Sorghum	plastid	30.49	26.36
KRH56699	Soybean	endoplasmic reticulum	18.39	25.15
KRH52626	Soybean	endoplasmic reticulum	22.42	23.58
KRH16003	Soybean	golgi, plasma membrane, vacuole	13.9	21.23
KRH54801	Soybean	plasma membrane	17.49	20.42

Protein Annotations

MapMan:5.9.2	EntrezGene:548081	UniProt:A0A0R0FZF4	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G071800	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005811	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0010344	GO:GO:0012511
GO:GO:0016020	GO:GO:0016021	GO:GO:0019915	GO:GO:0050826	EnsemblPlants:KRH07172	ProteinID:KRH07172
ProteinID:KRH07172.1	InterPro:Oleosin	UniProt:P29531	PFAM:PF01277	ScanProsite:PS00811	PANTHER:PTHR33203
PANTHER:PTHR33203:SF6	TMHMM:TMhelix	EMBL:U09119	UniParc:UPI0000130C6E	EMBL:X60773	SEG:seg

Description

hypothetical protein

Coordinates

chr16:+:7227783..7228862

Molecular Weight (calculated)

23394.0 Da

IEP (calculated)

9.384

GRAVY (calculated)

0.069

Length

223 amino acids

Sequence
(BLAST)

001: MTTVPPHSVQ VHTTTHRYEA GVVPPARFEA PRYEAGIKAP SSIYHSERGP TTSQVLAVVA GLPVGGILLL LAGLTLAGTL TGLVVATPLF IIFSPVLIPA
101: TVAIGLAVAG FLTSGVFGLT ALSSFSWILN YIRETQPASE NLAAAAKHHL AEAAEYVGQK TKEVGQKTKE VGQDIQSKAQ DTREAAARDA RDAREAAARD
201: ARDAKVEARD VKRTTVTATT ATA

Best Arabidopsis Sequence Match ( AT3G01570.1 )
(BLAST)

001: MADVRTHSHQ LQVHPQRQHE GGIKVLYPQS GPSSTQVLAV FVGVPIGGTL LTIAGLTLAG SVIGLMLAFP LFLIFSPVIV PAAFVIGLAM TGFLASGAIG
101: LTGLSSMSWV LNYIRRAGQH IPEELEEAKH RLADMAEYVG QRTKDAGQTI EDKAHDVREA KTFDVRDRDT TKGTHNVRDT KTT

Arabidopsis Description

Oleosin 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.