CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	golgi, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

cytosol: 16847873
cytosol: 19562800
cytosol: 21803444

msms PMID: 21803444 doi

P Jolivet, C Boulard, A Bellamy, B Valot, S d'Andréa, M Zivy, N Nesi, T Chardot

INRA, AgroParisTech, Institut Jean-Pierre Bourgin, UMR 1318, F-78000 Versailles, France. Pascale.Jolivet@versailles.inra.fr

msms PMID: 19562800 doi

P Jolivet, C Boulard, A Bellamy, C Larré, M Barre, H Rogniaux, S d'Andréa, T Chardot, N Nesi

NRA, UMR 206, Chimie Biologique, Thiverval-Grignon, France. jolivet@grignon.inra.fr

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67456	Canola	cytosol	99.5	99.5
Bra028458.1-P	Field mustard	golgi, nucleus, peroxisome	98.5	93.36
AT5G40420.1	Thale cress	cytosol	85.0	85.43
CDY50118	Canola	cytosol	83.0	72.49
CDY20040	Canola	cytosol	61.0	64.89
CDY49771	Canola	cytosol	60.5	64.36
CDY03988	Canola	cytosol, endoplasmic reticulum, golgi	60.5	63.35
Solyc02g086490.2.1	Tomato	extracellular	40.0	53.69
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	40.0	53.69
PGSC0003DMT400032872	Potato	cytosol, golgi, plastid	41.0	49.4
Solyc12g010920.1.1	Tomato	cytosol, golgi, plasma membrane	42.0	48.84
VIT_14s0066g00700.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	32.5	46.43
VIT_14s0066g00710.t01	Wine grape	golgi, plasma membrane, plastid	33.5	42.68
Zm00001d033612_P001	Maize	cytosol, golgi, plasma membrane	34.5	39.2
Os03t0699000-01	Rice	plastid	33.5	38.95
KRG93234	Soybean	nucleus	35.0	37.04
KRG94116	Soybean	nucleus	41.5	36.73
Zm00001d013494_P001	Maize	cytosol	33.5	36.02
KRH07172	Soybean	endoplasmic reticulum, nucleus	40.0	35.87
CDY35326	Canola	plasma membrane	26.0	35.62
GSMUA_Achr4P13900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	33.5	35.26
CDX77021	Canola	plasma membrane	25.0	34.48
CDY05844	Canola	cytosol	24.0	32.21
KRH56554	Soybean	endoplasmic reticulum, nucleus	31.5	31.82
CDX71696	Canola	cytosol	23.5	31.54
HORVU4Hr1G005800.1	Barley	plastid	35.5	29.71
KXG37789	Sorghum	plastid	35.0	27.13
CDX99345	Canola	golgi, plasma membrane, plastid, vacuole	21.5	26.06
CDX92248	Canola	golgi, plasma membrane, plastid, vacuole	21.5	26.06
CDX82338	Canola	golgi, plasma membrane, vacuole	21.0	25.45
CDX75969	Canola	cytosol, golgi, plasma membrane, plastid	21.0	25.45
CDX77269	Canola	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane, plastid	17.5	25.0
CDY34345	Canola	cytosol	21.0	24.71
CDY03377	Canola	cytosol	20.0	23.53
CDY24856	Canola	cytosol	21.0	23.33
CDX92679	Canola	cytosol	21.5	23.12
CDY11058	Canola	cytosol	21.0	22.95
CDY08967	Canola	cytosol, golgi, plasma membrane	20.5	22.91
CDX95515	Canola	plasma membrane	18.0	21.95
CDY06745	Canola	plasma membrane	18.0	21.95
CDY18527	Canola	golgi, plasma membrane, plastid	17.0	20.73

Protein Annotations

EnsemblPlants:CDY11685	EnsemblPlantsGene:GSBRNA2T00049853001	GO:A0A078FBB9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005811	GO:GO:0012511	GO:GO:0016020	GO:GO:0016021	InterPro:Oleosin
PANTHER:PTHR33203	PANTHER:PTHR33203:SF16	PFAM:PF01277	ProteinID:CDY11685	ProteinID:CDY11685.1	ScanProsite:PS00811
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDE0E8	UniProt:A0A078FBB9	MapMan:5.9.2	:

Description

BnaC06g12930DOleosin [Source:UniProtKB/TrEMBL;Acc:A0A078FBB9]

Coordinates

chrLK032013:-:330163..331671

Molecular Weight (calculated)

21276.7 Da

IEP (calculated)

9.709

GRAVY (calculated)

-0.048

Length

200 amino acids

Sequence
(BLAST)

001: MADTHRVDRT DRHLQFQSPY EGGRVSIQYE GGGGYGAEGY KSMMPERGPS STQVLSFLVG VPIVGSLLAI AGLLLAGSVI GLLISIPLFL LFSPVIVPAA
101: LTIGLAATGF LASGMFGLTG LSSVSWVLNY LRGTRKSSVP EQLEYAKKRM ADAVGYAGQK GKEMGQHVQN KAQEAKQYDI SKTHDTTTKG HETTQRTAAA

Best Arabidopsis Sequence Match ( AT5G40420.1 )
(BLAST)

001: MADTHRVDRT DRHFQFQSPY EGGRGQGQYE GDRGYGGGGY KSMMPESGPS STQVLSLLIG VPVVGSLLAL AGLLLAGSVI GLMVALPLFL LFSPVIVPAA
101: LTIGLAMTGF LASGMFGLTG LSSISWVMNY LRGTRRTVPE QLEYAKRRMA DAVGYAGQKG KEMGQHVQNK AQDVKQYDIS KPHDTTTKGH ETQGRTTAA

Arabidopsis Description

OLEO2Oleosin 21.2 kDa [Source:UniProtKB/Swiss-Prot;Acc:Q39165]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.