CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

cytosol: 16847873
cytosol: 21803444

msms PMID: 21803444 doi

P Jolivet, C Boulard, A Bellamy, B Valot, S d'Andréa, M Zivy, N Nesi, T Chardot

INRA, AgroParisTech, Institut Jean-Pierre Bourgin, UMR 1318, F-78000 Versailles, France. Pascale.Jolivet@versailles.inra.fr

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75969
CDX82338
CDX92248
CDX95515
CDX99345
CDY06745
CDY18527

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25140.1	CDX75969	AT3G18570.1	21798944
AT4G25140.1	CDX82338	AT3G18570.1	21798944
AT4G25140.1	CDX92248	AT3G18570.1	21798944
AT4G25140.1	CDX95515	AT3G18570.1	21798944
AT4G25140.1	CDX99345	AT3G18570.1	21798944
AT4G25140.1	CDY06745	AT3G18570.1	21798944
AT4G25140.1	CDY18527	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34345	Canola	cytosol	83.33	91.18
CDY03377	Canola	cytosol	83.33	91.18
AT4G25140.1	Thale cress	cytosol, golgi, plasma membrane	83.87	90.17
CDY11058	Canola	cytosol	88.17	89.62
CDY24856	Canola	cytosol	84.41	87.22
CDY08967	Canola	cytosol, golgi, plasma membrane	82.8	86.03
VIT_16s0013g00880.t01	Wine grape	plasma membrane	48.92	63.19
GSMUA_Achr1P00500_001	Banana	extracellular, golgi, plasma membrane	40.32	58.14
PGSC0003DMT400055585	Potato	cytosol, endoplasmic reticulum, nucleus, plastid	45.16	56.76
Solyc06g034040.1.1	Tomato	cytosol, golgi, plasma membrane, plastid	44.62	56.46
CDY05844	Canola	cytosol	43.01	53.69
CDX71696	Canola	cytosol	42.47	53.02
Zm00001d027258_P001	Maize	endoplasmic reticulum, extracellular, vacuole	29.03	52.43
KRG92187	Soybean	nucleus	41.4	52.38
KRH34604	Soybean	endoplasmic reticulum	40.86	51.7
Os04t0546500-01	Rice	plastid	39.25	49.32
CDY35326	Canola	plasma membrane	38.71	49.32
CDX77021	Canola	plasma membrane	37.63	48.28
Zm00001d002768_P001	Maize	golgi, peroxisome, plasma membrane	40.32	48.08
TraesCS2A01G417500.1	Wheat	golgi	40.86	47.2
TraesCS2D01G414800.1	Wheat	golgi	40.32	46.88
EES12607	Sorghum	golgi, peroxisome, plasma membrane	40.32	46.88
TraesCS2B01G436400.1	Wheat	golgi, peroxisome, plasma membrane	39.25	45.62
KXG40436	Sorghum	cytosol, golgi, plasma membrane	39.25	43.71
HORVU5Hr1G056030.1	Barley	golgi, peroxisome, plasma membrane	38.17	42.52
TraesCS5D01G188400.1	Wheat	golgi, peroxisome, plasma membrane	37.63	41.92
TraesCS5B01G181700.1	Wheat	golgi	37.63	41.92
Os09t0324000-02	Rice	plastid	32.26	37.97
CDX77269	Canola	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane, plastid	23.12	30.71
CDX99345	Canola	golgi, plasma membrane, plastid, vacuole	26.34	29.7
CDX92248	Canola	golgi, plasma membrane, plastid, vacuole	26.34	29.7
CDX75969	Canola	cytosol, golgi, plasma membrane, plastid	24.73	27.88
CDX82338	Canola	golgi, plasma membrane, vacuole	24.73	27.88
CDY20040	Canola	cytosol	25.27	25.0
CDX95515	Canola	plasma membrane	22.04	25.0
CDY06745	Canola	plasma membrane	22.04	25.0
CDY03988	Canola	cytosol, endoplasmic reticulum, golgi	24.73	24.08
CDY49771	Canola	cytosol	23.66	23.4
CDY18527	Canola	golgi, plasma membrane, plastid	20.43	23.17
CDY11685	Canola	cytosol	23.12	21.5
CDX67456	Canola	cytosol	23.12	21.5
CDY50118	Canola	cytosol	23.66	19.21

Protein Annotations

MapMan:5.9.2	unigene:Bna.2121	GO:C3S7G5	UniProt:C3S7G5	EnsemblPlants:CDX92679	ProteinID:CDX92679
ProteinID:CDX92679.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005811
GO:GO:0012511	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00154490001	InterPro:Oleosin	PFAM:PF01277
ScanProsite:PS00811	PANTHER:PTHR33203	PANTHER:PTHR33203:SF7	TMHMM:TMhelix	UniParc:UPI00019DBB9D	SEG:seg

Description

BnaC07g39370DOleosin [Source:UniProtKB/TrEMBL;Acc:C3S7G5]

Coordinates

chrLK031873:+:301049..302134

Molecular Weight (calculated)

20566.4 Da

IEP (calculated)

9.492

GRAVY (calculated)

-0.354

Length

186 amino acids

Sequence
(BLAST)

001: MTDTARTHHD ITTRDQYPLI SRDRDQYGMI GRDQYNMSGQ NYSKSRQIAK ATTAVTAGGS LLVLSSLTLV GTVIALIVAT PLLVIFSPIL VPALITVALL
101: ITGFLSSGGF GIAAITVFSW IYKYATGEHP QGSDKLDSAR MKLGSKAQDM KDRAYYYGQQ HTGEEHDRDR DHRTDRDRTR GTQHTT

Best Arabidopsis Sequence Match ( AT2G25890.2 )
(BLAST)

001: MVSLLKLQKQ HRTLNPYSLR KRKKEMADHQ QHQQQQQPIM RSLHESSPST RQIVRFVTAA TIGLSLLVLS GLTLTGTVIG LIVATPLMVL FSPVLVPAVI
101: TIGLLTMGFL FSGGCGVAAA TALTWIYKYV TGKHPMGADK VDYARMRIAE KAKELGHYTH SQPQQTHQTT TTTH

Arabidopsis Description

Oleosin [Source:UniProtKB/TrEMBL;Acc:O82308]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.